Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_031065.1 Length=159878 Score E Sequences producing significant alignments: (Bits) Value seq65234 208 8e-49 seq1462 161 1e-34 seq260686 109 6e-19 >seq65234 Length=1614 Score = 208 bits (230), Expect = 8e-49 Identities = 319/455 (70%), Gaps = 0/455 (0%) Strand=Plus/Plus Query 132573 CATCAAATCATTGATTTGCAGACCATAATCTAGATGACGAATACGGTTTTCATCTACACC 132632 ||| || | ||| ||||| | | ||||||| |||||||| | | ||||| || | || Sbjct 649 CATTAATTTATTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCC 708 Query 132633 TTTGTTGTTCTTTAATACAAGCAGGTTTTCAACTTCTAGATGCCACATTGGATAATAAAG 132692 | | || || ||||| || | | ||||||| |||||||||||| ||||| ||| ||| Sbjct 709 TCTATTATTTTTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAAC 768 Query 132693 AGTAGCTGCACCACCACGTACACCGCCTTGAGAACAAGATTTTACTGCAGTCTGAAAATG 132752 ||| || || || || | || || ||||||||||||||||||||||| | || || || Sbjct 769 AGTTGCGGCCCCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTG 828 Query 132753 TTTCCAAAAAGGAATTACGCCAGTATGTTTTACTTCGCCATTACCAATTTTTGAGCCTTC 132812 ||| |||||||||| || ||||| | |||| ||||| | || ||| Sbjct 829 TTTATAAAAAGGAATACATCCGGTATGAAATGCTTCTCCATTTCTGATAGGACTTCCTAA 888 Query 132813 AGCTCGAATCATACCGGCGTTGATGCCTATACCAGCTCGCTTGCTGATATACTTAATAAT 132872 ||||||||| ||| ||||| |||||||| || ||||| | | ||| || | ||| Sbjct 889 AGCTCGAATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAAT 948 Query 132873 ACTGTTACTTGCCGCATTAATAGAATTCAGTGAATCGCCAGCTTCGATAACTACACAAGA 132932 || ||| ||||||||||| || | ||| || ||| || | |||||||| Sbjct 949 TGCACTAGTTGTAGCATTAATAGAGTTTAAATTATCTGCACATTCAATTAACACACAAGA 1008 Query 132933 ACTAAATTGACGAGTAGGAGTACGAGCCCCCGCCATAATTGGTGTAGGTAATGAAATCTG 132992 ||||||||||||||| || || | | || | |||||| ||||| |||| || || | Sbjct 1009 ACTAAATTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTAGAGATATTTT 1068 Query 132993 TCGAGTAGATACAGCATCATAAAAGCGAATAATAT 133027 ||| || | |||| ||||||||| ||||| Sbjct 1069 AAAAGTGGAAATTGCATTATAAAAGCGCTGAATAT 1103 >seq1462 Length=4781 Score = 161 bits (178), Expect = 1e-34 Identities = 320/469 (68%), Gaps = 5/469 (1%) Strand=Plus/Minus Query 132554 TTTTACCAAGACGTTCCATCATCAAATCATTGATTTGCAGACCATAATCTAGATGACGAA 132613 |||||||| |||||| ||| | | |||||||| | || |||||||| ||||| | Sbjct 1464 TTTTACCA-GACGTTGATACATGAGTTTGTTGATTTGTACGCCGTAATCTAGGTGACGGA 1406 Query 132614 TACGGTTTTCATCTACACCTTTGTTGTTCTTTAATACAAGCAGGTTTTCAACTTCTAGAT 132673 |||||| | || ||||| ||| || || | || | | | |||||| ||| | | Sbjct 1405 CACGGTTACCTTCAACACCACGGTTATTTTTCAGGACTAATAAGCTTTCAATTTCCAAGT 1346 Query 132674 GCCACATTGGATAATAAAGAGTAGCTGCACCACCACGTACACCGCCTTGAGAACAAGATT 132733 ||||||| || ||| | || || || ||||| || ||||| |||||||| || ||||||| Sbjct 1345 GCCACATAGGGTAAAACAGTGTCGCGGCACCCCCGCGTACGCCGCCTTGCGAGCAAGATT 1286 Query 132734 TTACTGCAGTCTGAAAATGTTTCCAAAAAGGAATTACGCCAGTATGTTTTACTTCGCCAT 132793 | || || ||||| || ||||| | || || || || ||||| |||| ||| Sbjct 1285 TCACGGCCGTCTGGAAGTGTTTGTAGAACGGGATACAACCGGTATGGAAAGCTTCACCAC 1226 Query 132794 TACCAATTTTTGAGCCTTCAGCTCGAATCATACCGGCGTTGATGCCTATACCAGCTCGCT 132853 || ||| |||| || ||||| || || ||||| || || || || || | Sbjct 1225 CACGGATTGGGCTGCCTAGCGCACGAATACGGCCAGCATTGATACCGATCCCTGCGCG-T 1167 Query 132854 TGCTGATA--TACTTAATAATACTGTTACTTGCCGCATTAATAGAATTCAGTGAATCGCC 132911 || ||| | || |||| ||| || | || || ||||| | | |||||| Sbjct 1166 TG-TGAAACGTATTTAACGATAGCACTAGAAGTGGCGTTGATAGAGTCTAAGCTATCGCC 1108 Query 132912 AGCTTCGATAACTACACAAGAACTAAATTGACGAGTAGGAGTACGAGCCCCCGCCATAAT 132971 | ||||||| || || || || ||||| ||||| || || || |||| ||||| || Sbjct 1107 ACACTCGATAAGCACGCATGAGCTGAATTGGCGAGTCGGCGTCCGTACCCCAGCCATGAT 1048 Query 132972 TGGTGTAGGTAATGAAATCTGTCGAGTAGATACAGCATCATAAAAGCGA 133020 ||| |||||||| ||||| | || || || ||||||||||||||| Sbjct 1047 TGGCGTAGGTAAGGAAATTTTAAAGGTCGACACGGCATCATAAAAGCGA 999 >seq260686 Length=13603 Score = 109 bits (120), Expect = 6e-19 Identities = 266/403 (66%), Gaps = 0/403 (0%) Strand=Plus/Minus Query 132589 TGCAGACCATAATCTAGATGACGAATACGGTTTTCATCTACACCTTTGTTGTTCTTTAAT 132648 |||| || || || | |||||| | ||||| | || || || ||||||||| | Sbjct 5578 TGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTCTTCAGC 5519 Query 132649 ACAAGCAGGTTTTCAACTTCTAGATGCCACATTGGATAATAAAGAGTAGCTGCACCACCA 132708 || |||||| |||| ||||| |||||||||||||| || | || || |||||||| || Sbjct 5518 ACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCACCGCCG 5459 Query 132709 CGTACACCGCCTTGAGAACAAGATTTTACTGCAGTCTGAAAATGTTTCCAAAAAGGAATT 132768 || || ||||| ||||| || || || || || ||||| || || || | || ||||| Sbjct 5458 CGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAACGGAATG 5399 Query 132769 ACGCCAGTATGTTTTACTTCGCCATTACCAATTTTTGAGCCTTCAGCTCGAATCATACCG 132828 ||| || || | |||| || | || ||| || || || |||| Sbjct 5398 CAGCCGGTGTGGAATGCTTCACCGCCGCGGATCGGGCTGCCCAGCGCACGGATGCGACCG 5339 Query 132829 GCGTTGATGCCTATACCAGCTCGCTTGCTGATATACTTAATAATACTGTTACTTGCCGCA 132888 ||||| ||||| ||||| || |||| | ||||| | ||| | | | || Sbjct 5338 GCGTTAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAATCGCGCTGGAGGTGGCG 5279 Query 132889 TTAATAGAATTCAGTGAATCGCCAGCTTCGATAACTACACAAGAACTAAATTGACGAGTA 132948 ||||| |||| || ||||| || || | ||| || || || || || || || Sbjct 5278 TTAATGGAATCAAGGCTGTCGCCGCACTCAATCAGTACGCAGGAGCTGAACTGGCGCGTC 5219 Query 132949 GGAGTACGAGCCCCCGCCATAATTGGTGTAGGTAATGAAATCT 132991 || || || | || | ||||||||| || || | ||||||| Sbjct 5218 GGGGTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAATCT 5176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 508289820552080