Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_031077.1 Length=41760 Score E Sequences producing significant alignments: (Bits) Value seq399404 196 1e-45 seq194023 188 2e-43 seq449472 185 2e-42 seq37562 156 1e-33 >seq399404 Length=241 Score = 196 bits (216), Expect = 1e-45 Identities = 156/188 (83%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 30324 TCCATGCGCGGCGCCGTGACGTGCTGGCAGATTGACGCATCCATGCGGGACGGTAGTTTC 30383 |||||||| || || || |||||||| |||||||| ||||| | || || || | ||| Sbjct 188 TCCATGCGGGGAGCAGTTACGTGCTGACAGATTGAAGCATCAAGTCGCGATGGCAATTTT 129 Query 30384 CCACGCACCGCAAACAGGCAGTCTTCGCTGTTCGCCCTGGTAAGATGGCCCATGCCGATC 30443 || |||||||||||| |||||||||||||| |||| || | |||||||| |||||| Sbjct 128 CCCTTCACCGCAAACAGACAGTCTTCGCTGTTTGCCCGTGTCATGTGGCCCATCCCGATC 69 Query 30444 GCGCTGTTCCCCTTATGCTTATTCGTTTTATGCCAGGTGAATCCCTTCATGGTCATCAGT 30503 |||||||| || || |||||||| ||||| ||||||||||||||||||||||||||||| Sbjct 68 GCGCTGTTACCTTTGTGCTTATTGGTTTTGTGCCAGGTGAATCCCTTCATGGTCATCAGC 9 Query 30504 CGGAAGCC 30511 ||||| || Sbjct 8 CGGAACCC 1 >seq194023 Length=5833 Score = 188 bits (208), Expect = 2e-43 Identities = 263/366 (72%), Gaps = 2/366 (1%) Strand=Plus/Minus Query 36641 AAGCAGCAGTGGATCGCCGCATTCGCCGAAGGTGGTATCCGTACCCGTGAGCAGGTCTCT 36700 |||| |||||||| ||||| ||||| || || ||| || || |||||| | || Sbjct 368 AAGCGCCAGTGGATTGCCGCTTTCGCTGAGAACGGAATCAAAACACGCGAGCAGCTTTCG 309 Query 36701 GCCGGAATGCGTCATGCCAGAGCCAGTGAATCACCGTTCTGGCCTTCACCTGGTCAATTC 36760 || || | || || ||| | ||||| ||| |||||||| ||||| ||| | ||| Sbjct 308 GCAGGCGTTCGCCAGGCCCGCGCCAGCAGCTCAGATTTCTGGCCGTCACCCGGTAAGTTC 249 Query 36761 ATCAAGTGGTGCAAAGACAGCAAGATGGTGCTTGGCGTCAGCATCGATGATGTGATGGGG 36820 ||| ||||||||||||||| | |||||||||| |||| | | | || || |||| Sbjct 248 ATCGCCTGGTGCAAAGACAGCTCGGTGGTGCTTGGGGTCACCCTTCAGGACGTCATGGCA 189 Query 36821 GAGTTTCACCGGTACGCCAAAGAAAAAAGTCTCCAGCCTGGCGGACCTGAGAGATTCCCG 36880 ||||||||||| ||| | || || | | || | ||||| ||||| | ||||| Sbjct 188 GAGTTTCACCGATACAACCGGGAGAAGGGCATGCACACGGGCGGCGCTGAGCGGTTCCCC 129 Query 36881 TGG-CGCCACCCGGTCATGTACTGGATTGTGTGTGATACCCGGCGCGCTATGTACCAGCG 36939 ||| || | |||||| ||||||||| |||| || || |||||||| || ||||||||||| Sbjct 128 TGGTCGGC-CCCGGTGATGTACTGGGTTGTCTGCGACACCCGGCGGGCGATGTACCAGCG 70 Query 36940 GCAGCTGAGTGAGGCTGAAGTCGAGAAGCATGCGCGTAAGCTGCTTGATGAGTGGGCGCA 36999 ||| |||| |||||||| || |||||| || ||| || ||||| ||| || | Sbjct 69 TCAGATGAGCGAGGCTGAGGTGGAGAAGTTCGCCGCCAAGAAACTGGATGAATGGTCGAA 10 Query 37000 GAAGGT 37005 ||| || Sbjct 9 GAAAGT 4 >seq449472 Length=298 Score = 185 bits (204), Expect = 2e-42 Identities = 183/237 (77%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 30485 TCCCTTCATGGTCATCAGTCGGAAGCCCCACGCCTCTACAACCTTCAGCGCTTCAACCGG 30544 |||||||||||||||||| ||||| ||||| || || | |||||||||||||| | ||| Sbjct 298 TCCCTTCATGGTCATCAGCCGGAACCCCCAGGCATCCATCACCTTCAGCGCTTCCATCGG 239 Query 30545 CTGAGTTGGAACCCACCACATCGCCAGCAGGCAATCATCTGAAGCGAGATCCCATACAGG 30604 |||||||| ||||||||||| ||||||||||||| ||| | | ||||| ||| || Sbjct 238 TTGAGTTGGCACCCACCACATAGCCAGCAGGCAATTCTCTTCGGACAAATCCCTTACCGG 179 Query 30605 CAGGCGGCAGATATCCAGCACGTTCATCACCGGATATTTGAACCCGGCGCCGCGGTCGCC 30664 || ||||| |||||| ||||| ||||| | ||||| || |||||||| ||||| Sbjct 178 CAAACGGCAAATATCCTGCACGGTCATCGTTTGGTATTTATGTCCTGCGCCGCGTTCGCC 119 Query 30665 GTCTGCTGCCTTGTCGCGATATGACCAGGGAGGATCAGCGTAGATGAGTGTGTATTT 30721 ||| || || ||||| || | ||| || ||||| || || || || |||||||| Sbjct 118 GTCGTTGGCTTTATCGCGGTACGTCCACGGTGGATCTGCATAAATCAGGGTGTATTT 62 >seq37562 Length=17931 Score = 156 bits (172), Expect = 1e-33 Identities = 151/194 (78%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 41420 ATGGCTAAATCCCCAGCAGAACGCAAAGCCGCGCAGCGCGCGCGGCAGTCCGCCGCCGGT 41479 |||||||| || |||||||||||||||||||||||||||| |||||| | ||| |||| Sbjct 3121 ATGGCTAAGTCAGCAGCAGAACGCAAAGCCGCGCAGCGCGCACGGCAGGCTGCCAGCGGT 3062 Query 41480 GAGCGCAAGCTTGAACTGGTGCTGGATGCTCAGGAACTGGACATGCTGGCGCGGAACTGC 41539 |||| || || || |||||| | |||||||||||||| || ||||||| ||| ||| | Sbjct 3061 GAGCAGAAACTGGAGCTGGTGTTAGATGCTCAGGAACTCGAAATGCTGGAGCGTAACCGG 3002 Query 41540 GCCGCCCGGCGCCCTGGGCGTGCGCCGTATGAAATGTCTGAGTACATCGCGATGCTGATT 41599 | |||||| || || || | | | || || || | ||||| ||||| | || ||| Sbjct 3001 GTCGCCCGCCGTCCAGGCAGAGACTCTTACGAGCTGGCCGAGTATATCGCCCTTCTCATT 2942 Query 41600 CGCCAGGATGATGC 41613 || ||||||||||| Sbjct 2941 CGTCAGGATGATGC 2928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132718917054644