Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_031085.1 Length=166634 Score E Sequences producing significant alignments: (Bits) Value seq79071 212 7e-50 seq222524 183 3e-41 seq65234 174 2e-38 seq1462 138 1e-27 seq213894 129 6e-25 seq209331 125 8e-24 seq119848 91.5 2e-13 seq260686 86.0 7e-12 seq223569 82.4 8e-11 seq71472 82.4 8e-11 >seq79071 Length=852 Score = 212 bits (234), Expect = 7e-50 Identities = 158/185 (85%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 62745 TTACAAACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 62804 ||| | ||| |||||||||||||| | || |||||||||||||| || || ||||| || Sbjct 181 TTAAAGACTTTCAGTAAAGGTACGGGTAATTACGTCGCGCTGCTGCTCAGGCGTCAGTGA 240 Query 62805 GTTAAAGCGAACTGCATATCCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 62864 |||||| || || ||||| || || |||||||| |||||||||||||| ||||| ||||| Sbjct 241 GTTAAAACGCACGGCATAGCCTGAAACACGGATAGTCAGCTGCGGATAGTTTTCAGGATG 300 Query 62865 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTTACGTTCAGGTGTTGACCACC 62924 ||||||||||||||||| ||||| |||||||||||||| |||||||| || || ||||| Sbjct 301 TTTAACTGCATCTTCCAGCGTTTCGCGACGCAGAACGTTGACGTTCAGATGCTGTCCACC 360 Query 62925 TTCAA 62929 ||||| Sbjct 361 TTCAA 365 >seq222524 Length=8439 Score = 183 bits (202), Expect = 3e-41 Identities = 146/176 (83%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 62752 CTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAG 62811 || |||||||||||||| | || ||||| ||||||||||| || |||| ||||||||| Sbjct 4032 CTTTCAGTAAAGGTACGCGTAATCACGTCACGCTGCTGTTCTGGCGTCAAAGAGTTAAAA 4091 Query 62812 CGAACTGCATATCCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACT 62871 || || ||||| ||||| || || |||||||||||||||||||| ||||| ||||| || Sbjct 4092 CGCACGGCATAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCCGGGTGCTTCACC 4151 Query 62872 GCATCTTCCAGAGTTTCACGACGCAGAACGTTTACGTTCAGGTGTTGACCACCTTC 62927 || |||||||| |||||||| | ||| ||||| |||||||| || ||||| || || Sbjct 4152 GCCTCTTCCAGCGTTTCACGGCTCAGGACGTTGACGTTCAGATGCTGACCGCCCTC 4207 >seq65234 Length=1614 Score = 174 bits (192), Expect = 2e-38 Identities = 312/453 (69%), Gaps = 12/453 (3%) Strand=Plus/Plus Query 140469 CATTAGATCATTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACACC 140528 ||||| | ||| | ||| ||| ||||||| | |||||| | | |||||||| | || Sbjct 649 CATTAATTTATTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCC 708 Query 140529 TTTGTTATTTTTCAAAACAAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 140588 | | |||||||| ||||| | | |||||||| ||| | |||||| || || ||| || | Sbjct 709 TCTATTATTTTTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAAC 768 Query 140589 AGTAGCAGCGCCGCCACGAATTCCACCTTGTGAGCATGATTTAACAGCAGTCTGAAAATG 140648 ||| || || || || | || ||||||||| || || ||||| || || | || || || Sbjct 769 AGTTGCGGCCCCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTG 828 Query 140649 TTTCCAAAAAGGAATAACACCAGTATGACGTACTTCACCCATGCCAATCTTAGAACCTTC 140708 ||| ||||||||||| || |||||| | |||| || | | || | ||| Sbjct 829 TTTATAAAAAGGAATACATCCGGTATGAAATGCTTCTCCATTTCTGATAGGACTTCCTAA 888 Query 140709 GGCACGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAAT 140768 || ||||| |||| ||||||| || ||||| || |||| ||| | ||||| ||||| Sbjct 889 AGCTCGAATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAAT 948 Query 140769 TG---AAGCGGAAGCCTTATTGATAGACTTTAATGAATCACCTGC---CTCAATAACAAC 140822 || || | ||| ||| ||||| |||| ||| | |||| ||||| | || Sbjct 949 TGCACTAGTTGTAGC---ATTAATAGAGTTTA---AATTATCTGCACATTCAATTAACAC 1002 Query 140823 ACATGAACTAAACTGTCGAGTCGGAGTACGACAACCAGCCATAATAGGAGTTGGTAATGA 140882 ||| |||||||| || ||||| || || | || | |||||| || || |||| || Sbjct 1003 ACAAGAACTAAATTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTAGAGA 1062 Query 140883 AATCTGTCGAGTAGATACTGCTTCATAAAAACG 140915 || | ||| || | ||| | |||||| || Sbjct 1063 TATTTTAAAAGTGGAAATTGCATTATAAAAGCG 1095 >seq1462 Length=4781 Score = 138 bits (152), Expect = 1e-27 Identities = 292/433 (67%), Gaps = 2/433 (0%) Strand=Plus/Minus Query 140484 TTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACACCTTTGTTATTTTTCAA 140543 ||| || || ||||| | ||||| | ||||| |||| ||||| ||||||||||| Sbjct 1431 TTGTACGCCGTAATCTAGGTGACGGACACGGTTACCTTCAACACCACGGTTATTTTTCAG 1372 Query 140544 AAC-AAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGC 140602 || || ||| |||||| |||||| ||||| ||||| ||| | || || || || | Sbjct 1371 GACTAATAAG-CTTTCAATTTCCAAGTGCCACATAGGGTAAAACAGTGTCGCGGCACCCC 1313 Query 140603 CACGAATTCCACCTTGTGAGCATGATTTAACAGCAGTCTGAAAATGTTTCCAAAAAGGAA 140662 | || | || ||||| ||||| ||||| || || ||||| || ||||| | || || | Sbjct 1312 CGCGTACGCCGCCTTGCGAGCAAGATTTCACGGCCGTCTGGAAGTGTTTGTAGAACGGGA 1253 Query 140663 TAACACCAGTATGACGTACTTCACCCATGCCAATCTTAGAACCTTCGGCACGAATCATAC 140722 || ||| ||||| ||||||| | || ||| |||||||| | Sbjct 1252 TACAACCGGTATGGAAAGCTTCACCACCACGGATTGGGCTGCCTAGCGCACGAATACGGC 1193 Query 140723 CAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAATTGAAGCGGAAGCCT 140782 || | || ||||| || || ||||||| || | |||| ||| || | | |||| Sbjct 1192 CAGCATTGATACCGATCCCTGCGCGTTGTGAAACGTATTTAACGATAGCACTAGAAGTGG 1133 Query 140783 TATTGATAGACTTTAATGAATCACCTGCCTCAATAACAACACATGAACTAAACTGTCGAG 140842 |||||||| | ||| ||| || ||| |||| || ||||| || || || |||| Sbjct 1132 CGTTGATAGAGTCTAAGCTATCGCCACACTCGATAAGCACGCATGAGCTGAATTGGCGAG 1073 Query 140843 TCGGAGTACGACAACCAGCCATAATAGGAGTTGGTAATGAAATCTGTCGAGTAGATACTG 140902 |||| || || |||||||| || || || ||||| ||||| | || || || | Sbjct 1072 TCGGCGTCCGTACCCCAGCCATGATTGGCGTAGGTAAGGAAATTTTAAAGGTCGACACGG 1013 Query 140903 CTTCATAAAAACG 140915 | |||||||| || Sbjct 1012 CATCATAAAAGCG 1000 >seq213894 Length=28734 Score = 129 bits (142), Expect = 6e-25 Identities = 140/186 (75%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 62745 TTACAAACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 62804 ||||| |||| ||| |||||||| | ||| || || |||||||||| |||||| || Sbjct 8989 TTACATGCTCTGAGTGAAGGTACGGGTGATCACATCCTGCTGCTGTTCTTTAGTCAGCGA 8930 Query 62805 GTTAAAGCGAACTGCATATCCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 62864 ||| ||||| || ||||| || || || || ||||| | |||||||||||||||||| | Sbjct 8929 GTTGAAGCGTACCGCATAGCCCGACACGCGAATGGTTAACTGCGGATATTTTTCCGGGTC 8870 Query 62865 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTTACGTTCAGGTGTTGACCACC 62924 | | || || ||| ||||||| || ||||| ||||| ||||| ||||| || Sbjct 8869 TTCCATCGCTTCCAGCAGCATTTCACGGTTCATCACGTTGACGTTGAGGTGCTGACCCCC 8810 Query 62925 TTCAAT 62930 |||||| Sbjct 8809 TTCAAT 8804 >seq209331 Length=9407 Score = 125 bits (138), Expect = 8e-24 Identities = 132/174 (76%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 62757 AGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAAC 62816 ||| ||||| || | || || || |||||||||| |||||| ||||||||||| || Sbjct 315 AGTGAAGGTTCGGGTAATCACATCCTGCTGCTGTTCTTTAGTCAGTGAGTTAAAGCGGAC 374 Query 62817 TGCATATCCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATC 62876 || || ||||| || || |||||||||||||||||||| || ||||| | | || || Sbjct 375 CGCGTAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCTGGATGTTCCATCGCGTC 434 Query 62877 TTCCAGAGTTTCACGACGCAGAACGTTTACGTTCAGGTGTTGACCACCTTCAAT 62930 ||| ||||||| || |||||| ||||| ||||| ||||| ||||| || Sbjct 435 CAGCAGCATTTCACGGTTCATAACGTTAACGTTGAGGTGCTGACCGCCTTCGAT 488 >seq119848 Length=1010 Score = 91.5 bits (100), Expect = 2e-13 Identities = 89/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 70562 AATTTGGCGGACATGCATGGATTCGAACCATGGACCAATTGATTAACAGTCAACTGCTCT 70621 |||| | || | |||| ||||||||||| |||||||||||||| ||||||||||||| Sbjct 480 AATTGGTGGGTCGTGCA-GGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCT 538 Query 70622 ACC-ACTGAGCTACACATCCAAATTGGTGGGGAGTGATGGAGTCGAACCACC 70672 ||| ||||||||| | || || ||||||| ||| ||| ||||||| || Sbjct 539 ACCAACTGAGCTAACGACCCGAAGTGGTGGGTGATGACGGATTCGAACCGCC 590 >seq260686 Length=13603 Score = 86.0 bits (94), Expect = 7e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 140479 TTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACACCTTTGTTATTT 140538 ||||| || || || || ||||||||||| | |||||| |||| || || ||| || Sbjct 5584 TTCAGCTGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTC 5525 Query 140539 TTCAAAACAAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCG 140598 |||| || || || |||| ||||||| |||||| || || || | || || || Sbjct 5524 TTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCA 5465 Query 140599 CCGCCACGAATTCCACCTTGTGAGCATGATTTAACAGCAGTCTGAAAATGTTTCCAAAAA 140658 ||||| || | || || || ||||| || || || || ||||| || || || | || Sbjct 5464 CCGCCGCGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAAC 5405 Query 140659 GGAAT 140663 ||||| Sbjct 5404 GGAAT 5400 >seq223569 Length=13158 Score = 82.4 bits (90), Expect = 8e-11 Identities = 79/99 (80%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 70575 TGCATGGATTCGAACCATGGACCAATTGATTAACAGTCAACTGCTCTACC-ACTGAGCTA 70633 |||| ||||||||||| |||||||||||||| |||||||||||||||| ||||||||| Sbjct 12647 TGCA-GGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTA 12705 Query 70634 CACATCCAAATTGGTGGGGAGTGATGGAGTCGAACCACC 70672 | || | ||||||| ||| || ||||||| || Sbjct 12706 ACGACCCGATATGGTGGGTGATGACGGGCTCGAACCGCC 12744 >seq71472 Length=1850 Score = 82.4 bits (90), Expect = 8e-11 Identities = 67/78 (86%), Gaps = 4/78 (5%) Strand=Plus/Minus Query 70577 CATGGATTCGAACCATGGACCAATTGATTAACAGTCAACTGCTCTACC-ACTGAGCTACA 70635 || ||||||||||| |||||| ||||||||| |||||||||||||||| ||||||||| | Sbjct 1548 CAAGGATTCGAACCTTGGACCTATTGATTAAGAGTCAACTGCTCTACCAACTGAGCTA-A 1490 Query 70636 CATCC--AAATTGGTGGG 70651 || || |||| || ||| Sbjct 1489 CAGCCCGAAATCGGGGGG 1472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 529774111069040