Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_031087.1 Length=168272 Score E Sequences producing significant alignments: (Bits) Value seq260686 201 1e-46 seq1462 196 5e-45 seq209331 170 2e-37 seq79071 167 2e-36 seq222524 159 4e-34 seq213894 154 2e-32 seq65234 129 6e-25 >seq260686 Length=13603 Score = 201 bits (222), Expect = 1e-46 Identities = 346/500 (69%), Gaps = 2/500 (0%) Strand=Plus/Minus Query 141201 GGACTAAACAGAGTGATGTAATCATTCTTAATCAAACGTTCAATCATCAGGTTATTAATC 141260 || || |||||||| || | ||| ||| | || || | | |||||| || || | | Sbjct 5638 GGGCTGAACAGAGTAATCTCTTCACCCTTCAGCAGGCGCTGATACATCAGCTTGTTCAGC 5579 Query 141261 TGAACGCCATAATCTAAATGACGAATACGGTTTTCATCTACACCTTTGTTGTTCTTAAGT 141320 || ||||| || || | |||||| | ||||| | || || || ||||||||| || Sbjct 5578 TGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTCTTCAGC 5519 Query 141321 ACGAGGAGGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAGTGTCGCCGCGCCACCA 141380 || || ||| |||| ||||||| ||||| ||||| ||| |||| ||||| || || || Sbjct 5518 ACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCACCGCCG 5459 Query 141381 CGGACTCCACCTTGGGAGCAGGATTTAACTGCTGTTTGGAAGTGTTTCCAGAAAGGAATA 141440 || || || || || |||||||| || || || || |||||||| || |||| ||||| Sbjct 5458 CGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAACGGAATG 5399 Query 141441 ACTCCAGTATGTTTGACTTCACCGAATCCAATTTTTGAACCCTCGGCGCGAATCATGCCT 141500 || || || |||||||| | || ||| || || || || Sbjct 5398 CAGCCGGTGTGGAATGCTTCACCGCCGCGGATCGGGCTGCCCAGCGCACGGATGCGACCG 5339 Query 141501 GCATTAATACCAATACCTGCACGCTTACTGATGTATTTCGTAATTGATGCAGCAGCTT-C 141559 || ||||| || ||||| ||||||| | | ||| ||| ||| | || | || | | Sbjct 5338 GCGTTAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAATCGC-GCTGGAGGTGGC 5280 Query 141560 GTTAATTGAATTAAGACTATCACCACCTTCAATAACCACGCATGAACTGAACTGGCGTGT 141619 |||||| |||| ||| || || || | ||||| | ||||| || ||||||||||| || Sbjct 5279 GTTAATGGAATCAAGGCTGTCGCCGCACTCAATCAGTACGCAGGAGCTGAACTGGCGCGT 5220 Query 141620 CGGAGTACGAACACCAGACATAATTGGTGTTGGCAATGAAATCTTTTTAGTAGAAACTGC 141679 ||| || || || || ||||||||||| || |||| |||||||| || || | || Sbjct 5219 CGGGGTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAATCTTAAAGGTGGAGATCGC 5160 Query 141680 ATCATAGAAACGAATAACGT 141699 ||| |||||||| | |||| Sbjct 5159 ATCGTAGAAACGCTTGACGT 5140 >seq1462 Length=4781 Score = 196 bits (216), Expect = 5e-45 Identities = 325/464 (70%), Gaps = 8/464 (2%) Strand=Plus/Minus Query 141233 CAAACGTTCAATCATCAGGTTATTAATCTGAACGCCATAATCTAAATGACGAATACGGTT 141292 || ||||| | ||| || || || || || ||||| ||||||| ||||| | |||||| Sbjct 1458 CAGACGTTGATACATGAGTTTGTTGATTTGTACGCCGTAATCTAGGTGACGGACACGGTT 1399 Query 141293 TTCATCTACACCTTTGTTGTTCTTAAGTACGAGGAGGTTTTCAACTTCCAAGTGCCAGAT 141352 | || ||||| ||| || || || || | | | |||||| |||||||||||| || Sbjct 1398 ACCTTCAACACCACGGTTATTTTTCAGGACTAATAAGCTTTCAATTTCCAAGTGCCACAT 1339 Query 141353 TGGATAGTACAGTGTCGCCGCGCCACCACGGACTCCACCTTGGGAGCAGGATTTAACTGC 141412 || || |||||||||| || || || || || || ||||| ||||| ||||| || || Sbjct 1338 AGGGTAAAACAGTGTCGCGGCACCCCCGCGTACGCCGCCTTGCGAGCAAGATTTCACGGC 1279 Query 141413 TGTTTGGAAGTGTTTCCAGAAAGGAATAACTCCAGTATGTTTGACTTCACCGAATCCAAT 141472 || ||||||||||| |||| || ||| || ||||| ||||||| ||| Sbjct 1278 CGTCTGGAAGTGTTTGTAGAACGGGATACAACCGGTATGGAAAGCTTCACC---ACCACG 1222 Query 141473 TTTTGAAC--CCTCG-GCGCGAATCATGCCTGCATTAATACCAATACCTGCACGCTTACT 141529 ||| | ||| | || ||||| ||| ||||| ||||| || ||||| || | Sbjct 1221 GATTGGGCTGCCTAGCGCACGAATACGGCCAGCATTGATACCGATCCCTGCGCGTTGTGA 1162 Query 141530 GATGTATTTCGTAATTGATGCAGCAGCTTCGTTAATTGAAT-TAAGACTATCACCACCTT 141588 | |||||| || | || || |||| || || | |||| ||||| |||| | Sbjct 1161 AACGTATTTAACGATAGCACTAGAAGTGGCGTTGATAGAGTCTAAG-CTATCGCCACACT 1103 Query 141589 CAATAACCACGCATGAACTGAACTGGCGTGTCGGAGTACGAACACCAGACATAATTGGTG 141648 | |||| ||||||||| ||||| ||||| ||||| || || || |||| ||| ||||| | Sbjct 1102 CGATAAGCACGCATGAGCTGAATTGGCGAGTCGGCGTCCGTACCCCAGCCATGATTGGCG 1043 Query 141649 TTGGCAATGAAATCTTTTTAGTAGAAACTGCATCATAGAAACGA 141692 | || || ||||| || || || || |||||||| || ||| Sbjct 1042 TAGGTAAGGAAATTTTAAAGGTCGACACGGCATCATAAAAGCGA 999 >seq209331 Length=9407 Score = 170 bits (188), Expect = 2e-37 Identities = 150/187 (80%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 59989 ATTATAGTGCCTCTGTGAAAGTACGGGCGATAACGTCGCGCTGCTGTTCTGGTGTCAGGG 60048 |||| |||| | ||||| || |||| || || || ||||||||||| ||||| | Sbjct 302 ATTACAGTGATTTAGTGAAGGTTCGGGTAATCACATCCTGCTGCTGTTCTTTAGTCAGTG 361 Query 60049 AGTTAAAGCGCACCGCGTAGCCGGAAACACGAATGGTAAGCTGCGGGTATTTTTCCGGAT 60108 |||||||||| |||||||| |||||||| |||||||| |||||||| ||||| || |||| Sbjct 362 AGTTAAAGCGGACCGCGTAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCTGGAT 421 Query 60109 GCTCAACCGCGTCCAGCAGAGTTTCGCGACGCAGCACGTTAACGTTCAGGTGCTGACCGC 60168 | || | |||||||||||| |||| || || ||||||||||| ||||||||||||| Sbjct 422 GTTCCATCGCGTCCAGCAGCATTTCACGGTTCATAACGTTAACGTTGAGGTGCTGACCGC 481 Query 60169 CTTCAAT 60175 |||| || Sbjct 482 CTTCGAT 488 >seq79071 Length=852 Score = 167 bits (184), Expect = 2e-36 Identities = 142/175 (81%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 60000 TCTGTGAAAGTACGGGCGATAACGTCGCGCTGCTGTTCTGGTGTCAGGGAGTTAAAGCGC 60059 || || || ||||||| || |||||||||||||| || || ||||| |||||||| ||| Sbjct 191 TCAGTAAAGGTACGGGTAATTACGTCGCGCTGCTGCTCAGGCGTCAGTGAGTTAAAACGC 250 Query 60060 ACCGCGTAGCCGGAAACACGAATGGTAAGCTGCGGGTATTTTTCCGGATGCTCAACCGCG 60119 || || ||||| |||||||| || || |||||||| || ||||| ||||| | ||| || Sbjct 251 ACGGCATAGCCTGAAACACGGATAGTCAGCTGCGGATAGTTTTCAGGATGTTTAACTGCA 310 Query 60120 TCCAGCAGAGTTTCGCGACGCAGCACGTTAACGTTCAGGTGCTGACCGCCTTCAA 60174 || ||| |||||||||||||| ||||| |||||||| ||||| || ||||||| Sbjct 311 TCTTCCAGCGTTTCGCGACGCAGAACGTTGACGTTCAGATGCTGTCCACCTTCAA 365 >seq222524 Length=8439 Score = 159 bits (176), Expect = 4e-34 Identities = 139/173 (80%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 60000 TCTGTGAAAGTACGGGCGATAACGTCGCGCTGCTGTTCTGGTGTCAGGGAGTTAAAGCGC 60059 || || || ||||| | || ||||| |||||||||||||| |||| |||||||| ||| Sbjct 4035 TCAGTAAAGGTACGCGTAATCACGTCACGCTGCTGTTCTGGCGTCAAAGAGTTAAAACGC 4094 Query 60060 ACCGCGTAGCCGGAAACACGAATGGTAAGCTGCGGGTATTTTTCCGGATGCTCAACCGCG 60119 || || || |||||||| |||||||| |||||||| ||||| ||||| |||| ||||| Sbjct 4095 ACGGCATAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCCGGGTGCTTCACCGCC 4154 Query 60120 TCCAGCAGAGTTTCGCGACGCAGCACGTTAACGTTCAGGTGCTGACCGCCTTC 60172 || ||| ||||| || | ||| ||||| |||||||| ||||||||||| || Sbjct 4155 TCTTCCAGCGTTTCACGGCTCAGGACGTTGACGTTCAGATGCTGACCGCCCTC 4207 >seq213894 Length=28734 Score = 154 bits (170), Expect = 2e-32 Identities = 138/173 (80%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 60003 GTGAAAGTACGGGCGATAACGTCGCGCTGCTGTTCTGGTGTCAGGGAGTTAAAGCGCACC 60062 ||||| ||||||| ||| || || ||||||||||| ||||| ||||| ||||| ||| Sbjct 8976 GTGAAGGTACGGGTGATCACATCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAGCGTACC 8917 Query 60063 GCGTAGCCGGAAACACGAATGGTAAGCTGCGGGTATTTTTCCGGATGCTCAACCGCGTCC 60122 || ||||| || || |||||||| | |||||| ||||||||||| | || | ||| ||| Sbjct 8916 GCATAGCCCGACACGCGAATGGTTAACTGCGGATATTTTTCCGGGTCTTCCATCGCTTCC 8857 Query 60123 AGCAGAGTTTCGCGACGCAGCACGTTAACGTTCAGGTGCTGACCGCCTTCAAT 60175 ||||| |||| || || |||||| ||||| ||||||||||| |||||||| Sbjct 8856 AGCAGCATTTCACGGTTCATCACGTTGACGTTGAGGTGCTGACCCCCTTCAAT 8804 >seq65234 Length=1614 Score = 129 bits (142), Expect = 6e-25 Identities = 298/447 (67%), Gaps = 14/447 (3%) Strand=Plus/Plus Query 141252 TTATTAATCTGAACGCCATAATCTAAATGACGAATACGGTTTTCATCTACACCTTTGTTG 141311 |||||||| || || ||||||| | |||||| | | ||||| || | ||| | || Sbjct 656 TTATTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCCTCTATTA 715 Query 141312 TTCTTAAGTACGAGGAGGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAGTGTCGCC 141371 || || | || | | ||||||| ||| | ||||| ||||| || | | || || Sbjct 716 TTTTTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAACAGTTGCG 775 Query 141372 GCGCCACCACGGACTCCACCTTGGGAGCAGGATTTAACTGCTGTTTGGAAGTGTTTCCAG 141431 || || || | ||||||||||| || || ||||| ||||| ||||||||||||| | Sbjct 776 GCCCCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTGTTTATAA 835 Query 141432 AAAGGAATAACTCCAGTATGTTTGACTTCACCGAATCCAATTTTTGA----AC--CCT-C 141484 ||||||||| ||| ||||| |||| || |||| ||| || ||| Sbjct 836 AAAGGAATACATCCGGTATGAAATGCTTCTCC-------ATTTCTGATAGGACTTCCTAA 888 Query 141485 GGCGCGAATCATGCCTGCATTAATACCAATACCTGCACGCTTACTGATGTATTTCGTAAT 141544 || ||||| || || ||||| || || ||||| || | | | ||||| ||| Sbjct 889 AGCTCGAATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAAT 948 Query 141545 TGATGCAGCAGCTTCGTTAATTGAATTAAGACTATCACCACCTTCAATAACCACGCATGA 141604 || || | | ||||| || || | | |||| ||| |||||| | ||| || || Sbjct 949 TGCACTAGTTGTAGCATTAATAGAGTTTAAATTATCTGCACATTCAATTAACACACAAGA 1008 Query 141605 ACTGAACTGGCGTGTCGGAGTACGAACACCAGACATAATTGGTGTTGGCAATGAAATCTT 141664 ||| || || || || || || | || || |||||||| ||||| || | || || || Sbjct 1009 ACTAAATTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTAGAGATATTTT 1068 Query 141665 TTTAGTAGAAACTGCATCATAGAAACG 141691 ||| |||| ||||| ||| || || Sbjct 1069 AAAAGTGGAAATTGCATTATAAAAGCG 1095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534983002109120