Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_031090.1 Length=169621 Score E Sequences producing significant alignments: (Bits) Value seq79071 194 2e-44 seq222524 181 1e-40 seq1462 163 3e-35 seq65234 150 2e-31 seq209331 123 3e-23 seq213894 109 6e-19 seq260686 87.8 2e-12 >seq79071 Length=852 Score = 194 bits (214), Expect = 2e-44 Identities = 151/180 (84%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 142541 GGTGGTCAACACCTGAACGTTAATGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 142600 ||||| || || |||||||| || ||||||||||| ||||| ||||||||||||||||| Sbjct 360 GGTGGACAGCATCTGAACGTCAACGTTCTGCGTCGCGAAACGCTGGAAGATGCAGTTAAA 301 Query 142601 CATCCAGAAAAATATCCGCAGTTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 142660 ||||| ||||| ||||||||| |||| |||||||| || || ||||| || || |||||| Sbjct 300 CATCCTGAAAACTATCCGCAGCTGACTATCCGTGTTTCAGGCTATGCCGTGCGTTTTAAC 241 Query 142661 TCTCTGACTCCGGAACAGCAGCGTGACGTTATCGCTCGTACCTTTACTGAGAGTCTATAA 142720 || ||||| || || |||||||| ||||| || | |||||||||||||| ||||| ||| Sbjct 240 TCACTGACGCCTGAGCAGCAGCGCGACGTAATTACCCGTACCTTTACTGAAAGTCTTTAA 181 >seq222524 Length=8439 Score = 181 bits (200), Expect = 1e-40 Identities = 148/180 (82%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 142541 GGTGGTCAACACCTGAACGTTAATGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 142600 || ||||| || |||||||| || || ||| | |||||||| |||||||| || || ||| Sbjct 4204 GGCGGTCAGCATCTGAACGTCAACGTCCTGAGCCGTGAAACGCTGGAAGAGGCGGTGAAG 4145 Query 142601 CATCCAGAAAAATATCCGCAGTTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 142660 || || || |||||||||||| ||||||| || || ||||||||||| || || |||||| Sbjct 4144 CACCCGGAGAAATATCCGCAGCTGACCATTCGCGTTTCCGGTTATGCCGTGCGTTTTAAC 4085 Query 142661 TCTCTGACTCCGGAACAGCAGCGTGACGTTATCGCTCGTACCTTTACTGAGAGTCTATAA 142720 ||| |||| || ||||||||||||||||| || | |||||||||||||| || || ||| Sbjct 4084 TCTTTGACGCCAGAACAGCAGCGTGACGTGATTACGCGTACCTTTACTGAAAGCCTTTAA 4025 >seq1462 Length=4781 Score = 163 bits (180), Expect = 3e-35 Identities = 317/467 (68%), Gaps = 1/467 (0%) Strand=Plus/Plus Query 61695 TCGTTTTTATGATGCCGTTTCTACTCATCAAGTTTCATTGCCTACTCCAATTATGGCAGG 61754 ||| |||||||||||||| || || | || |||| || ||||| ||||| ||||| || Sbjct 999 TCGCTTTTATGATGCCGTGTCGACCTTTAAAATTTCCTTACCTACGCCAATCATGGCTGG 1058 Query 61755 TGCTCGTACTCCGACTCGCCAGTTCTCTAGTTGTGTAGTTATTGAAGCCGGTGATTCGTT 61814 | || || ||||||||||| ||| || || |||| || || ||| || Sbjct 1059 GGTACGGACGCCGACTCGCCAATTCAGCTCATGCGTGCTTATCGAGTGTGGCGATAGCTT 1118 Query 61815 AAAATCTATTAACAAAACTTCAGCATCAATTATTGAATATATTTCTAAACGAGCTGGTAT 61874 | | ||||| ||| ||||| | || || |||| |||| |||| || || || Sbjct 1119 AGACTCTATCAACGCCACTTCTAGTGCTATCGTTAAATACGTTTCACAACGCGCAGGGAT 1178 Query 61875 AGGTATCAACGTTGGTATGCTTCGTGCAGAAGGTTCTAAGATCGGTATGGGCGAAGTTCG 61934 |||||||| | ||| ||||||| ||| ||| || || |||| | Sbjct 1179 CGGTATCAATGCTGGCCGTATTCGTGCGCTAGGCAGCCCAATCCGTGGTGGTGAAGCTTT 1238 Query 61935 ACATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAATCTTGTTCTCA 61994 ||||| ||| ||| || |||| ||||| ||||| || || || |||||||| || || Sbjct 1239 CCATACCGGTTGTATCCCGTTCTACAAACACTTCCAGACGGCCGTGAAATCTTGCTCGCA 1298 Query 61995 AGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCACTTAGAAGTAGA 62054 ||| || | || || ||||| || ||| || ||| || ||||||||||| ||| | || Sbjct 1299 AGGCGGCGTACGCGGGGGTGCCGCGACACTGTTTTACCCTATGTGGCACTTGGAAATTGA 1358 Query 62055 GAACCTATTAGTTCTGAAAAATAACAAAGGCGTGGATGAAAACCGTATTCGACATATGGA 62114 | | ||||||| |||||||||||| || || || | |||||| | || || | || Sbjct 1359 AAGCTTATTAGTCCTGAAAAATAACCGTGGTGTTGAAGGTAACCGTGTCCGTCACCTAGA 1418 Query 62115 CTACGGAATTCAGATTAATGACCTTATGATGGAACGCCTTGGTAAAA 62161 ||||| | || || || | || ||| |||| | |||||||| Sbjct 1419 TTACGGCGTACAAATCAACAAACTCATGTATCAACGTC-TGGTAAAA 1464 >seq65234 Length=1614 Score = 150 bits (166), Expect = 2e-31 Identities = 290/425 (68%), Gaps = 12/425 (3%) Strand=Plus/Minus Query 61678 CGTTTGAAACATATTATTCGTTTTTATGATGCCGTTTCTACTCATCAAGTTTCATTGCCT 61737 ||| |||| ||||| || |||||| |||| |||| ||| | || | || | || Sbjct 1113 CGTATGAATTATATTCAGCGCTTTTATAATGCAATTTCCACTTTTAAAATATCTCTACCC 1054 Query 61738 ACTCCAATTATGGCAGGTGCTCGTACTCCGACTCGCCAGTTCTCTAGTTGTGTAGTTATT 61797 || || |||||| |||| | | || || ||||| || || | |||||| | ||| Sbjct 1053 ACACCGATTATGTCAGGAGTAAGAACACCAACTCGTCAATTTAGTTCTTGTGTGTTAATT 994 Query 61798 GAAGCCGGTGATTCGTTAAAATCTATTAAC---AAAACTTCAGCATCAATTATTGAATAT 61854 ||| | ||| ||||| |||||||| | |||| ||| ||| | ||||| Sbjct 993 GAATGTGCAGATAATTTAAACTCTATTAATGCTACAACTAGTGCA---ATTGTAAAATAT 937 Query 61855 ATTTCTAAACGAGCTGGTATAGGTATCAACGTTGGTATGCTTCGTGC---AGAAGGTTCT 61911 ||||| ||||||| || ||||| || |||| |||| |||| || || | || || Sbjct 936 GTTTCTCAACGAGCAGGAATAGGCATTAACGCTGGTCAAATTCGAGCTTTAGGAAGTCCT 877 Query 61912 AAGATCGGTATGGGCGAAGTTCGACATACGGGTGTTATTCCATTCTGGAAACATTTCCAA 61971 | || | | || |||| ||||| || |||||| || | ||||| |||||| Sbjct 876 A---TCAGAAATGGAGAAGCATTTCATACCGGATGTATTCCTTTTTATAAACACTTCCAA 820 Query 61972 ACTGCAGTAAAATCTTGTTCTCAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTAT 62031 | |||||||||||||||||||||||||| || | || || || || || | | ||| Sbjct 819 AGCGCAGTAAAATCTTGTTCTCAAGGTGGAGTTAGAGGAGGGGCCGCAACTGTTTTTTAC 760 Query 62032 CCGATGTGGCACTTAGAAGTAGAGAACCTATTAGTTCTGAAAAATAACAAAGGCGTGGAT 62091 || || ||||| ||||| | || || |||||||| | |||||||| | ||| | || Sbjct 759 CCAATATGGCATCTAGAAATTGAAAATTTATTAGTTTTAAAAAATAATAGAGGAATTGAA 700 Query 62092 GAAAA 62096 ||||| Sbjct 699 GAAAA 695 >seq209331 Length=9407 Score = 123 bits (136), Expect = 3e-23 Identities = 128/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 142541 GGTGGTCAACACCTGAACGTTAATGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 142600 || ||||| ||||| |||||||| ||| || ||||||| ||| || || | | Sbjct 482 GGCGGTCAGCACCTCAACGTTAACGTTATGAACCGTGAAATGCTGCTGGACGCGATGGAA 423 Query 142601 CATCCAGAAAAATATCCGCAGTTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 142660 |||||||| |||||||||||| ||||||| || || |||||||| || || ||||||||| Sbjct 422 CATCCAGAGAAATATCCGCAGCTGACCATTCGCGTTTCCGGTTACGCGGTCCGCTTTAAC 363 Query 142661 TCTCTGACTCCGGAACAGCAGCGTGACGTTATCGCTCGTACCTTTACT 142708 || |||||| |||||||||| || || || | || ||||| ||| Sbjct 362 TCACTGACTAAAGAACAGCAGCAGGATGTGATTACCCGAACCTTCACT 315 >seq213894 Length=28734 Score = 109 bits (120), Expect = 6e-19 Identities = 128/173 (74%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 142541 GGTGGTCAACACCTGAACGTTAATGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 142600 || ||||| ||||| ||||| || || || ||||||| ||| || || | | Sbjct 8810 GGGGGTCAGCACCTCAACGTCAACGTGATGAACCGTGAAATGCTGCTGGAAGCGATGGAA 8869 Query 142601 CATCCAGAAAAATATCCGCAGTTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 142660 | || ||||||||||||||||| ||||| || || || || ||||| || ||||| ||| Sbjct 8870 GACCCGGAAAAATATCCGCAGTTAACCATTCGCGTGTCGGGCTATGCGGTACGCTTCAAC 8929 Query 142661 TCTCTGACTCCGGAACAGCAGCGTGACGTTATCGCTCGTACCTTTACTGAGAG 142713 || |||||| |||||||||| || || ||| | |||||||| ||| |||| Sbjct 8930 TCGCTGACTAAAGAACAGCAGCAGGATGTGATCACCCGTACCTTCACTCAGAG 8982 >seq260686 Length=13603 Score = 87.8 bits (96), Expect = 2e-12 Identities = 282/429 (66%), Gaps = 8/429 (2%) Strand=Plus/Plus Query 61696 CGTTTTTATGATGCCGTTTCTACTCATCAAG-TTTCATTGCCTACTCCAATTATGGCAGG 61754 ||||| || ||||| | || || | | ||| |||| |||| || ||||||||| | || Sbjct 5148 CGTTTCTACGATGCGATCTCCAC-CTTTAAGATTTCGCTGCCGACGCCAATTATGTCCGG 5206 Query 61755 TGCTCGTACTCCGACTCGCCAGTTCTCTAGTTGTGTAGTTATTGAAGCCGGTGATTCGTT 61814 | || || ||||| ||||||||| || ||| | ||||| ||| || | Sbjct 5207 CGTGCGCACCCCGACGCGCCAGTTCAGCTCCTGCGTACTGATTGAGTGCGGCGACAGCCT 5266 Query 61815 AAAATCTATTAACAAAACTTC-AGCATCAATTATTGAATATATTTCTAAACGAGCTGGTA 61873 | || |||||| || || ||| | ||| | | || ||||| | || || |||| Sbjct 5267 TGATTCCATTAACGCCACCTCCAGCG-CGATTGTGAAGTACGTTTCTCAGCGTGCCGGTA 5325 Query 61874 TAGGTATCAACGTTGGTATGCTTCGTGCAGAAGGTTCTAAGATCGGTATGGGCGAAG--T 61931 | || || |||| ||| | ||||| || |||| | || |||| | Sbjct 5326 TCGGCATTAACGCCGGTCGCATCCGTGCGCTGGGCAGCCCGATCCGCGGCGGTGAAGCAT 5385 Query 61932 TCGACATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAATCTTGTTC 61991 || ||| ||| || ||||| |||| || || ||||| || || || || || || || Sbjct 5386 TCCACAC-CGGCTGC-ATTCCGTTCTATAAGCACTTCCAGACCGCGGTGAAGTCCTGCTC 5443 Query 61992 TCAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCACTTAGAAGT 62051 ||| || || | || || ||||| || || || || || |||||||| | ||||| Sbjct 5444 TCAGGGCGGCGTGCGCGGCGGTGCAGCGACCCTGTTCTACCCAATGTGGCATCTGGAAGT 5503 Query 62052 AGAGAACCTATTAGTTCTGAAAAATAACAAAGGCGTGGATGAAAACCGTATTCGACATAT 62111 || | ||| | || ||||| || ||| ||||| || | ||||| | || ||||| Sbjct 5504 GGAAAGCCTGCTGGTGCTGAAGAACAACCGCGGCGTTGAAGGCAACCGCGTGCGTCATAT 5563 Query 62112 GGACTACGG 62120 ||||||||| Sbjct 5564 GGACTACGG 5572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539272864143960