Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_031095.1 Length=168758 Score E Sequences producing significant alignments: (Bits) Value seq260686 201 1e-46 seq1462 185 9e-42 seq222524 154 2e-32 seq209331 152 6e-32 seq79071 145 8e-30 seq213894 141 1e-28 seq65234 127 2e-24 >seq260686 Length=13603 Score = 201 bits (222), Expect = 1e-46 Identities = 344/499 (69%), Gaps = 0/499 (0%) Strand=Plus/Plus Query 136347 ACGTTATTCGTTTCTATGATGCAGTTTCTACTAAAAAGATTTCATTGCCAACACCAATTA 136406 |||| | |||||||| ||||| | || || |||||||| |||| || ||||||| Sbjct 5140 ACGTCAAGCGTTTCTACGATGCGATCTCCACCTTTAAGATTTCGCTGCCGACGCCAATTA 5199 Query 136407 TGTCTGGTGTTCGTACTCCAACCCGCCAGTTCAGTTCATGCGTAGTTATTGAAGGTGGTG 136466 |||| || || || || || || ||||||||||| || |||||| | ||||| | || | Sbjct 5200 TGTCCGGCGTGCGCACCCCGACGCGCCAGTTCAGCTCCTGCGTACTGATTGAGTGCGGCG 5259 Query 136467 ATAGTCTTAATTCAATTAACGAAGCCGCTGCATCAATTACGAAATACATTAGTAAGCGTG 136526 | || ||| |||| ||||||| || | | ||| ||| ||| || | |||||| Sbjct 5260 ACAGCCTTGATTCCATTAACGCCACCTCCAGCGCGATTGTGAAGTACGTTTCTCAGCGTG 5319 Query 136527 CTGGTATTGGTATTAATGCGGGGATGATTCGTGCAGAAGGATCAAAAATTGGATTCGGTG 136586 | ||||| || ||||| || || || ||||| || || | ||||| Sbjct 5320 CCGGTATCGGCATTAACGCCGGTCGCATCCGTGCGCTGGGCAGCCCGATCCGCGGCGGTG 5379 Query 136587 AAGTCAAGCATACTGGTGTTATTCCTTTCTGGAAACACTTCCAAACCGCAGTTAAGTCAT 136646 ||| || || || ||||| |||| || |||||||| ||||| || ||||| | Sbjct 5380 AAGCATTCCACACCGGCTGCATTCCGTTCTATAAGCACTTCCAGACCGCGGTGAAGTCCT 5439 Query 136647 GCTCCCAAGGCGGAGTCCGTGGTGGTGCAGCTACACTGTATTATCCGATGTGGCACTTGG 136706 |||| || ||||| || || || |||||||| || |||| || || |||||||| ||| Sbjct 5440 GCTCTCAGGGCGGCGTGCGCGGCGGTGCAGCGACCCTGTTCTACCCAATGTGGCATCTGG 5499 Query 136707 AAGTTGAAAACCTCCTCGTACTTAAGAACAACAAAGGTGTAGATGAAAACCGTATTCGCC 136766 |||| |||| ||| || || || ||||||||| || || || | ||||| | || | Sbjct 5500 AAGTGGAAAGCCTGCTGGTGCTGAAGAACAACCGCGGCGTTGAAGGCAACCGCGTGCGTC 5559 Query 136767 ATTTAGATTATGGTGTTCAGATTAATAACCTGATGATTGAACGTTTGATTAAGAATGATT 136826 || | || || || || ||| | || || |||||| | | || || | ||| ||| Sbjct 5560 ATATGGACTACGGCGTGCAGCTGAACAAGCTGATGTATCAGCGCCTGCTGAAGGGTGAAG 5619 Query 136827 ACATCACTCTGTTTAGTCC 136845 | || |||||||| || || Sbjct 5620 AGATTACTCTGTTCAGCCC 5638 >seq1462 Length=4781 Score = 185 bits (204), Expect = 9e-42 Identities = 319/461 (69%), Gaps = 2/461 (0%) Strand=Plus/Plus Query 136354 TCGTTTCTATGATGCAGTTTCTACTAAAAAGATTTCATTGCCAACACCAATTATGTCTGG 136413 ||| || |||||||| || || || || ||||| || || || ||||| ||| |||| Sbjct 999 TCGCTTTTATGATGCCGTGTCGACCTTTAAAATTTCCTTACCTACGCCAATCATGGCTGG 1058 Query 136414 TGTTCGTACTCCAACCCGCCAGTTCAGTTCATGCGTAGTTATTGAAGGTGGTGATAGTCT 136473 || || || || || ||||| ||||| |||||||| |||| || |||| ||||| || Sbjct 1059 GGTACGGACGCCGACTCGCCAATTCAGCTCATGCGTGCTTATCGAGTGTGGCGATAG-CT 1117 Query 136474 TA-ATTCAATTAACGAAGCCGCTGCATCAATTACGAAATACATTAGTAAGCGTGCTGGTA 136532 || | || || |||| | || | || |||||| || | || || || | Sbjct 1118 TAGACTCTATCAACGCCACTTCTAGTGCTATCGTTAAATACGTTTCACAACGCGCAGGGA 1177 Query 136533 TTGGTATTAATGCGGGGATGATTCGTGCAGAAGGATCAAAAATTGGATTCGGTGAAGTCA 136592 | ||||| ||||| || |||||||| ||| ||| | ||||||| Sbjct 1178 TCGGTATCAATGCTGGCCGTATTCGTGCGCTAGGCAGCCCAATCCGTGGTGGTGAAGCTT 1237 Query 136593 AGCATACTGGTGTTATTCCTTTCTGGAAACACTTCCAAACCGCAGTTAAGTCATGCTCCC 136652 ||||| ||| ||| || |||| ||||||||||| || || || || || ||||| | Sbjct 1238 TCCATACCGGTTGTATCCCGTTCTACAAACACTTCCAGACGGCCGTGAAATCTTGCTCGC 1297 Query 136653 AAGGCGGAGTCCGTGGTGGTGCAGCTACACTGTATTATCCGATGTGGCACTTGGAAGTTG 136712 ||||||| || || || ||||| || ||||||| ||| || ||||||||||||||| ||| Sbjct 1298 AAGGCGGCGTACGCGGGGGTGCCGCGACACTGTTTTACCCTATGTGGCACTTGGAAATTG 1357 Query 136713 AAAACCTCCTCGTACTTAAGAACAACAAAGGTGTAGATGAAAACCGTATTCGCCATTTAG 136772 ||| | | | || || || || ||| ||||| || | |||||| | || || ||| Sbjct 1358 AAAGCTTATTAGTCCTGAAAAATAACCGTGGTGTTGAAGGTAACCGTGTCCGTCACCTAG 1417 Query 136773 ATTATGGTGTTCAGATTAATAACCTGATGATTGAACGTTTG 136813 |||| || || || || || || || ||| | ||||| || Sbjct 1418 ATTACGGCGTACAAATCAACAAACTCATGTATCAACGTCTG 1458 >seq222524 Length=8439 Score = 154 bits (170), Expect = 2e-32 Identities = 138/173 (80%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 47305 GAAGGCGGTCAGCACCTGAACGTTAACGTGTTGCGTCGCGAAACCTTGCTGGATGCGGTT 47364 || ||||||||||| |||||||| ||||| || | || ||||| || || ||||| Sbjct 4207 GAGGGCGGTCAGCATCTGAACGTCAACGTCCTGAGCCGTGAAACGCTGGAAGAGGCGGTG 4148 Query 47365 GAGCACCCAGAAAAATACCCGCAGCTGACTATTCGCGTTTCCGGATACGCGGTGCGCTTC 47424 ||||||| || ||||| ||||||||||| |||||||||||||| || || ||||| || Sbjct 4147 AAGCACCCGGAGAAATATCCGCAGCTGACCATTCGCGTTTCCGGTTATGCCGTGCGTTTT 4088 Query 47425 AACTCCTTGACACCAGAACAGCAGCGCGACGTTATCGCTCGTACTTTCACAGA 47477 ||||| ||||| |||||||||||||| ||||| || | ||||| || || || Sbjct 4087 AACTCTTTGACGCCAGAACAGCAGCGTGACGTGATTACGCGTACCTTTACTGA 4035 >seq209331 Length=9407 Score = 152 bits (168), Expect = 6e-32 Identities = 146/187 (78%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 47302 ATTGAAGGCGGTCAGCACCTGAACGTTAACGTGTTGCGTCGCGAAACCTTGCTGGATGCG 47361 || ||||||||||||||||| ||||||||||| || || |||| ||||||| ||| Sbjct 488 ATCGAAGGCGGTCAGCACCTCAACGTTAACGTTATGAACCGTGAAATGCTGCTGGACGCG 429 Query 47362 GTTGAGCACCCAGAAAAATACCCGCAGCTGACTATTCGCGTTTCCGGATACGCGGTGCGC 47421 | || || ||||| ||||| ||||||||||| |||||||||||||| |||||||| ||| Sbjct 428 ATGGAACATCCAGAGAAATATCCGCAGCTGACCATTCGCGTTTCCGGTTACGCGGTCCGC 369 Query 47422 TTCAACTCCTTGACACCAGAACAGCAGCGCGACGTTATCGCTCGTACTTTCACAGAGGCA 47481 || ||||| |||| ||||||||||| || || || | || || ||||| | || Sbjct 368 TTTAACTCACTGACTAAAGAACAGCAGCAGGATGTGATTACCCGAACCTTCACTAAATCA 309 Query 47482 CTATAAT 47488 || |||| Sbjct 308 CTGTAAT 302 >seq79071 Length=852 Score = 145 bits (160), Expect = 8e-30 Identities = 137/175 (78%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 47303 TTGAAGGCGGTCAGCACCTGAACGTTAACGTGTTGCGTCGCGAAACCTTGCTGGATGCGG 47362 ||||||| || ||||| |||||||| ||||| ||||||||||||| || ||||| | Sbjct 365 TTGAAGGTGGACAGCATCTGAACGTCAACGTTCTGCGTCGCGAAACGCTGGAAGATGCAG 306 Query 47363 TTGAGCACCCAGAAAAATACCCGCAGCTGACTATTCGCGTTTCCGGATACGCGGTGCGCT 47422 || | || || ||||| || |||||||||||||| || ||||| || || || ||||| | Sbjct 305 TTAAACATCCTGAAAACTATCCGCAGCTGACTATCCGTGTTTCAGGCTATGCCGTGCGTT 246 Query 47423 TCAACTCCTTGACACCAGAACAGCAGCGCGACGTTATCGCTCGTACTTTCACAGA 47477 | ||||| |||| || || |||||||||||||| || | ||||| || || || Sbjct 245 TTAACTCACTGACGCCTGAGCAGCAGCGCGACGTAATTACCCGTACCTTTACTGA 191 >seq213894 Length=28734 Score = 141 bits (156), Expect = 1e-28 Identities = 135/173 (78%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 47302 ATTGAAGGCGGTCAGCACCTGAACGTTAACGTGTTGCGTCGCGAAACCTTGCTGGATGCG 47361 |||||||| ||||||||||| ||||| |||||| || || |||| ||||||| ||| Sbjct 8804 ATTGAAGGGGGTCAGCACCTCAACGTCAACGTGATGAACCGTGAAATGCTGCTGGAAGCG 8863 Query 47362 GTTGAGCACCCAGAAAAATACCCGCAGCTGACTATTCGCGTTTCCGGATACGCGGTGCGC 47421 | || |||| |||||||| |||||| | || |||||||| || || || ||||| ||| Sbjct 8864 ATGGAAGACCCGGAAAAATATCCGCAGTTAACCATTCGCGTGTCGGGCTATGCGGTACGC 8923 Query 47422 TTCAACTCCTTGACACCAGAACAGCAGCGCGACGTTATCGCTCGTACTTTCAC 47474 |||||||| |||| ||||||||||| || || ||| | ||||| ||||| Sbjct 8924 TTCAACTCGCTGACTAAAGAACAGCAGCAGGATGTGATCACCCGTACCTTCAC 8976 >seq65234 Length=1614 Score = 127 bits (140), Expect = 2e-24 Identities = 292/440 (66%), Gaps = 0/440 (0%) Strand=Plus/Minus Query 136355 CGTTTCTATGATGCAGTTTCTACTAAAAAGATTTCATTGCCAACACCAATTATGTCTGGT 136414 || || ||| ||||| |||| ||| || || || | || ||||| |||||||| || Sbjct 1095 CGCTTTTATAATGCAATTTCCACTTTTAAAATATCTCTACCCACACCGATTATGTCAGGA 1036 Query 136415 GTTCGTACTCCAACCCGCCAGTTCAGTTCATGCGTAGTTATTGAAGGTGGTGATAGTCTT 136474 || | || ||||| || || || ||||| || || | |||||| ||| |||| | | Sbjct 1035 GTAAGAACACCAACTCGTCAATTTAGTTCTTGTGTGTTAATTGAATGTGCAGATAATTTA 976 Query 136475 AATTCAATTAACGAAGCCGCTGCATCAATTACGAAATACATTAGTAAGCGTGCTGGTATT 136534 || || ||||| | | || ||||| ||||| || | | || || || || Sbjct 975 AACTCTATTAATGCTACAACTAGTGCAATTGTAAAATATGTTTCTCAACGAGCAGGAATA 916 Query 136535 GGTATTAATGCGGGGATGATTCGTGCAGAAGGATCAAAAATTGGATTCGGTGAAGTCAAG 136594 || ||||| || || ||||| || |||| || || || |||| Sbjct 915 GGCATTAACGCTGGTCAAATTCGAGCTTTAGGAAGTCCTATCAGAAATGGAGAAGCATTT 856 Query 136595 CATACTGGTGTTATTCCTTTCTGGAAACACTTCCAAACCGCAGTTAAGTCATGCTCCCAA 136654 ||||| || ||||||||| | ||||||||||||| |||||| || || || || ||| Sbjct 855 CATACCGGATGTATTCCTTTTTATAAACACTTCCAAAGCGCAGTAAAATCTTGTTCTCAA 796 Query 136655 GGCGGAGTCCGTGGTGGTGCAGCTACACTGTATTATCCGATGTGGCACTTGGAAGTTGAA 136714 || ||||| | || || || || || | | ||| || || ||||| | ||| ||||| Sbjct 795 GGTGGAGTTAGAGGAGGGGCCGCAACTGTTTTTTACCCAATATGGCATCTAGAAATTGAA 736 Query 136715 AACCTCCTCGTACTTAAGAACAACAAAGGTGTAGATGAAAACCGTATTCGCCATTTAGAT 136774 || | | || | || || || | ||| | || ||||| | | || ||| | ||| Sbjct 735 AATTTATTAGTTTTAAAAAATAATAGAGGAATTGAAGAAAATAGAGTACGTCATCTTGAT 676 Query 136775 TATGGTGTTCAGATTAATAA 136794 |||| ||| || |||||||| Sbjct 675 TATGCTGTACAAATTAATAA 656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 536528497252880