Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_031107.1 Length=246291 Score E Sequences producing significant alignments: (Bits) Value seq63939 215 8e-51 seq494847 190 3e-43 seq105800 138 2e-27 seq2677 138 2e-27 seq93888 136 6e-27 seq367800 91.5 2e-13 seq289611 86.0 1e-11 seq67594 86.0 1e-11 seq442449 84.2 3e-11 >seq63939 Length=2243 Score = 215 bits (238), Expect = 8e-51 Identities = 233/305 (76%), Gaps = 4/305 (1%) Strand=Plus/Plus Query 201791 ATGAAACAATATCTGGACTTACTGCGTGATGTTC-GCGAAAACGGGGATGT-AAAAGCCG 201848 |||||||| |||||||| ||| ||| |||| | || || || | | |||||| | Sbjct 1900 ATGAAACAGTATCTGGATTTAATGCAACATGTGCTGCACGAA--GGCACGCCAAAAGCTG 1957 Query 201849 ACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACAAG 201908 |||||||||| || || || || || |||| || | ||||||||| || ||| | || | Sbjct 1958 ACCGTACCGGCACCGGTACGCTTTCAATTTTTGGTCACCAGATGCGTTTCAACCTGCAGG 2017 Query 201909 AAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCTGC 201968 | ||||||||||||||||||||||| || ||| | || || || || |||||||||| Sbjct 2018 ATGGTTTTCCGCTGGTCACCACCAAGAAATGTCATATCCGCTCGATTATTCATGAGCTGC 2077 Query 201969 TGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCATCT 202028 ||||||| || | || || ||||||||| ||| | ||||| ||||||||| |||||| Sbjct 2078 TGTGGTTTCTGAAAGGCGATACCAACATCGGTTATCTCAAAGAAAACAACGTCTCCATCT 2137 Query 202029 GGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCGTA 202088 |||| || ||||||||| | || || || | ||||||||||| || || || ||||| | Sbjct 2138 GGGATGAGTGGGCGGATGAGAATGGCGATCTCGGCCCGGTGTATGGCAAACAGTGGCGCA 2197 Query 202089 GCTGG 202093 ||||| Sbjct 2198 GCTGG 2202 >seq494847 Length=1062 Score = 190 bits (210), Expect = 3e-43 Identities = 226/304 (74%), Gaps = 2/304 (1%) Strand=Plus/Minus Query 201791 ATGAAACAATATCTGGACTTACTGCGTGATGTTCGCGAAAACGGGGATGTA-AAAGCCGA 201849 |||||||| ||||||| ||| ||| | || | ||| | ||| | | ||| || Sbjct 763 ATGAAACAGTATCTGGCGTTAATGCAGCACGTGCTCGAGCA-GGGCACGCCCAAAAATGA 705 Query 201850 CCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACAAGA 201909 ||| ||||| || ||||| || || |||| || | |||||||| || || | || || Sbjct 704 CCGCACCGGAACCGGCACGCTGTCGATTTTTGGTCATCAGATGCGTTTCAATCTGCAGGA 645 Query 201910 AGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCTGCT 201969 ||||||||||||||||||||||| ||| || | || || ||||| ||||||||||| Sbjct 644 CGGTTTTCCGCTGGTCACCACCAAGAAGTGCCATTTGCGCTCTATCATTCATGAGCTGCT 585 Query 201970 GTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCATCTG 202029 ||||||||| | |||||||| |||||| || |||| || || || || | ||||| Sbjct 584 GTGGTTCCTTAACGGTGACACTAACATCGCCTACCTGAAGGAAAATAAGGTGTCGATCTG 525 Query 202030 GGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCGTAG 202089 |||||| ||||| ||| |||| |||||| | || ||||| || || || || ||||| || Sbjct 524 GGACGAGTGGGCCGATGAAAAGGGTGACCTCGGGCCGGTTTATGGCAAACAGTGGCGCAG 465 Query 202090 CTGG 202093 |||| Sbjct 464 CTGG 461 Score = 138 bits (152), Expect = 2e-27 Identities = 197/272 (72%), Gaps = 4/272 (1%) Strand=Plus/Minus Query 202490 CTTTCTTGTCAGCTCTATCAGCG-TAGTGCGGACATGTTCCTTGGCGTACCGTTTAACAT 202548 || || || || || |||||||| | |||| | || ||||| ||| | ||||| || || Sbjct 289 CTCTCCTGCCAACTGTATCAGCGCTCCTGCG-ATATCTTCCTCGGCCTGCCGTTCAATAT 231 Query 202549 CGCGTCTTACGCCTTGCTGGTACACATGTTTGCACAACAG-GCGAACATGGCGGTAGGCG 202607 ||| ||||| |||||||| || ||| | || || ||| |||| | ||| || || | Sbjct 230 CGCCAGCTACGCTTTGCTGGTGCATATGATGGCCCAGCAGTGCGACC-TGGAAGTGGGTG 172 Query 202608 ACTTCGTCTGGACAGGTGGTGATACGCATCTGTACTCCAACCATCTGGAACAAGCTGACC 202667 | || |||||||| ||||| ||||| ||||||||| |||||| ||||| || | || Sbjct 171 ATTTTGTCTGGACCGGTGGCGATACCCATCTGTACAGCAACCACCTGGAGCAGACGCGCC 112 Query 202668 TCCAACTTACCCGTGACCCTAAACCGTTACCGAAGTTGGTTATCAAACGTAAGCCCGATT 202727 | || || || || || || | | |||||| || ||||||| || ||||| || | Sbjct 111 TGCAGCTGACGCGCGAACCGCGCGCCCTGCCGAAGCTGATTATCAAGCGCAAGCCGGAGT 52 Query 202728 CCATCTTCGACTACAAATTCGAAGACTTCGAG 202759 | ||||||||||| || || ||||||||| Sbjct 51 CTATCTTCGACTATCGCTTTGATGACTTCGAG 20 >seq105800 Length=3879 Score = 138 bits (152), Expect = 2e-27 Identities = 208/296 (70%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 201791 ATGAAACAATATCTGGACTTACTGCGTGATGTTCGCGAAAACGGGGATGTAAAAGCCGAC 201850 ||||| ||||||||||| || || | |||| | | ||| || ||| | || Sbjct 2606 ATGAAGCAATATCTGGATCTATTGGATCATGTATACCGCACCGGCACTGAAAAGACAGAT 2665 Query 201851 CGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACAAGAA 201910 ||||| || || ||||| | | ||| || || || ||||| ||| | | ||| Sbjct 2666 CGTACGGGCACAGGCACGCGCAGTGTATTTGGCTATCAAATGCGTTTTGATCTGAAAGCT 2725 Query 201911 GGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCTGCTG 201970 || |||||| ||||||||||||||||| | || | || || || |||||||| || | Sbjct 2726 GGCTTTCCGTTGGTCACCACCAAAAAGTTACATATGCGATCCATTATCCATGAACTAATC 2785 Query 201971 TGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCATCTGG 202030 |||||| | | ||||| || |||||| ||||||||||| || || | ||| ||| Sbjct 2786 TGGTTCTTAAAAGGTGAGACGAACATCAGCTATTTGAAAGAAAATGGTGTTAGCATTTGG 2845 Query 202031 GACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCG 202086 || |||||||| ||| ||||||| | ||||| ||||| || || |||||||| Sbjct 2846 GATGAATGGGCTGATGAAAACGGGAATTTAGGTCCGGTTTATGGCTCACAATGGCG 2901 >seq2677 Length=2322 Score = 138 bits (152), Expect = 2e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 201847 CGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACA 201906 ||||||||||||||| |||||| | || ||||||| | ||| |||||||| | | || Sbjct 2093 CGACCGTACCGGTACCGGCACCTTATCCATTTTCGGTCACCAAATGCGCTTCGATCTGCA 2152 Query 201907 AGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCT 201966 | | || || || | |||||||| ||||| || || || || || || || ||||| Sbjct 2153 ACAGGGCTTCCCCTTAGTCACCACGAAAAAATGCCATCTGCGCTCGATTATTCACGAGCT 2212 Query 201967 GCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCAT 202026 ||||||||| | | ||| |||||||| ||| || | ||||| ||||| || || || Sbjct 2213 GCTGTGGTTTTTAAAGGGAGACACCAATATCGCTTACCTAAAAGAGAACAAGGTAACGAT 2272 Query 202027 CTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGT 202075 ||||| |||||||| || | | || ||||||| ||||| || ||| Sbjct 2273 TTGGGATGAATGGGCAGACGAGCAGGGCAACTTAGGTCCGGTTTATGGT 2321 >seq93888 Length=1140 Score = 136 bits (150), Expect = 6e-27 Identities = 222/317 (70%), Gaps = 2/317 (1%) Strand=Plus/Plus Query 202495 TTGTCAGCTCTATCAGCGTAGTGCGGACATGTTCCTTGGCGTACCGTTTAACATCGCGTC 202554 ||| |||||||||||||| | || | || | ||| |||| ||||| ||||| Sbjct 119 TTGCCAGCTCTATCAGCGCTCTTGTGATGTCTTTTTAGGCTTACCCTTTAATATCGCCAG 178 Query 202555 TTACGCCTTGCTGGTACACATGTTTGCACAACAG-GCGAACATGGCGGTAGGCGACTTCG 202613 || || | ||||| || ||| | || || ||| | || | | | || ||||| || | Sbjct 179 CTATGCGCTACTGGTCCATATGGTCGCTCAGCAGTGTGATC-TCGAAGTCGGCGATTTTG 237 Query 202614 TCTGGACAGGTGGTGATACGCATCTGTACTCCAACCATCTGGAACAAGCTGACCTCCAAC 202673 | |||||||| || |||||||| || || || || || | |||||||| || | ||| Sbjct 238 TTTGGACAGGGGGCGATACGCACCTCTATTCTAATCACTTAGAACAAGCGCACTTACAAT 297 Query 202674 TTACCCGTGACCCTAAACCGTTACCGAAGTTGGTTATCAAACGTAAGCCCGATTCCATCT 202733 | | ||||| ||| | | || |||||||| || ||||| ||||| || || || | Sbjct 298 TAAGTCGTGAGCCTCGTGCACTGCCTAAGTTGGTCATTAAACGCAAGCCGGACTCTATTT 357 Query 202734 TCGACTACAAATTCGAAGACTTCGAGGTTGTCGATTACATTTCGCATCCGGCGATTAAAG 202793 |||| ||| || || || |||||| | | | ||| | |||| || ||||| |||| Sbjct 358 TCGATTACTGTTTTGATGATTTCGAGATAGAAGGCTACGATCCGCACCCTGCGATCAAAG 417 Query 202794 CGCCCGTCGCGATCTAA 202810 ||||||||||||| ||| Sbjct 418 CGCCCGTCGCGATTTAA 434 >seq367800 Length=224 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/141 (76%), Gaps = 4/141 (3%) Strand=Plus/Plus Query 201846 CCGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAA-CTTA 201904 |||| || ||||| || ||||| | | || ||||| | ||||||||||| | || Sbjct 85 CCGATCGCACCGGCACCGGCACGCGCAGCGTGTTCGGTTGGCAGATGCGCTTCGATCTGG 144 Query 201905 CAAGAAGGTTTTCCGC-TGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGA 201963 | | ||| ||||| | | ||||||||||| ||| | ||||| || || |||||||| || Sbjct 145 C--GCAGGGTTTCCCCATCGTCACCACCAAGAAGCTGCACCTGCGCTCGATCATCCACGA 202 Query 201964 GCTGCTGTGGTTCCTCATGGG 201984 ||||||||||||||| | ||| Sbjct 203 GCTGCTGTGGTTCCTGAAGGG 223 >seq289611 Length=552 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 4032 CGTAGCTCAGTTGGTTAGAGCGCTCGCCTGATAAGCGGGAGGTCGGTAGTTCAAGTCTAC 4091 ||||||||||||||||||||| | ||| ||||||||| | |||||||||||| ||||||| Sbjct 183 CGTAGCTCAGTTGGTTAGAGCACACGCTTGATAAGCGTGGGGTCGGTAGTTCGAGTCTAC 124 Query 4092 TCGAGACAACCA 4103 || | | |||| Sbjct 123 CCGGGCCCACCA 112 >seq67594 Length=1251 Score = 86.0 bits (94), Expect = 1e-11 Identities = 129/181 (71%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 118883 TGGTCAGGTCAATCTTGGGGCACCTGGGATCACCAGACGGCTATCGAGCTGTCGAACTTC 118942 |||||||| ||| ||||| |||||||||| || ||||| |||||||| ||||| Sbjct 533 TGGTCAGGACAAAAGCAGGGCAACTGGGATCACAGTACTGCTATTGAGCTGTCAAACTTT 592 Query 118943 AACCTGCAACAGTGTACTGGCCCACATGTGTTAGACCTGCCGCG-TGCGACCCAGTCGCA 119001 ||| ||| || || || | ||| | |||||||||| || | | |||||| Sbjct 593 AACGCGCAGCATTGCCGCGGTGGTAAAGTGCTTAACCTGCCGCGCTGTG-CTCAGTCGAT 651 Query 119002 GATTACTAACGGCTGGATTGAACACACTGAGAACCCTGGCGACCTGTCAGACGGCCACTG 119061 || ||| ||||||||||| ||| ||| ||||||||||| | || ||||||| || Sbjct 652 CATCCATAATGGCTGGATTGAGCACTGTGATAACCCTGGCGATATCTCCAACGGCCAGTG 711 Query 119062 G 119062 | Sbjct 712 G 712 >seq442449 Length=285 Score = 84.2 bits (92), Expect = 3e-11 Identities = 78/96 (81%), Gaps = 5/96 (5%) Strand=Plus/Minus Query 4283 AGAATTGTCCGAGTGGCTGAAAGAGCTCCCCTGCTAAGGGAGTGGTGGCGC---AAGCTG 4339 ||| ||| ||||||||||||| | ||||||||||||||||||| ||| || || || Sbjct 285 AGAGTTGCCCGAGTGGCTGAAGGGGCTCCCCTGCTAAGGGAGT-ATGGGGCTAAAAACTC 227 Query 4340 C-CCGAAGGTTCGAATCCTTCATTCTCCGCCAAATC 4374 | ||| ||||||||||| ||| |||||||||| || Sbjct 226 CATCGAGGGTTCGAATCCCTCACTCTCCGCCAATTC 191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 783085853181160