Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_031126.1 Length=244840 Score E Sequences producing significant alignments: (Bits) Value seq494847 154 2e-32 seq2677 152 8e-32 seq63939 127 3e-24 seq93888 111 2e-19 seq285532 87.8 3e-12 >seq494847 Length=1062 Score = 154 bits (170), Expect = 2e-32 Identities = 153/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 200092 AAGAAAGACCGTACCGGTANNNNNACCACGTCTATTTTCGGTGCACAGATGCGCTTCAAT 200151 || || ||||| ||||| | || ||| ||||| ||| |||||||| |||||| Sbjct 712 AAAAATGACCGCACCGGAACCGGCACGCTGTCGATTTTTGGTCATCAGATGCGTTTCAAT 653 Query 200152 CTACAAGACGGCTTCCCATTGGTGACGACCAAGAAGTGCCATCTCCGTTCCATCATTCAC 200211 || || ||||| || || |||| || ||||||||||||||| | || || |||||||| Sbjct 652 CTGCAGGACGGTTTTCCGCTGGTCACCACCAAGAAGTGCCATTTGCGCTCTATCATTCAT 593 Query 200212 GAGCTGTTGTGGTTCCTTAACGGTGACACCAATATCAAGTATCTGAACGATAACAATGTC 200271 |||||| |||||||||||||||||||||| || ||| || ||||| || || || || Sbjct 592 GAGCTGCTGTGGTTCCTTAACGGTGACACTAACATCGCCTACCTGAAGGAAAATAAGGTG 533 Query 200272 ACCATTTGGGACGAATGGGC 200291 | || |||||||| ||||| Sbjct 532 TCGATCTGGGACGAGTGGGC 513 Score = 127 bits (140), Expect = 3e-24 Identities = 207/296 (70%), Gaps = 4/296 (1%) Strand=Plus/Minus Query 200834 GCGAGCTTTCCTGTCAGCTGTATCAGCGTAGCGCTGATATGTTTTTAGGCGTGCCGTTCA 200893 || |||| ||||| || ||||||||||| | ||||| || | ||| ||||||||| Sbjct 294 GCAAGCTCTCCTGCCAACTGTATCAGCGCTCCTGCGATATCTTCCTCGGCCTGCCGTTCA 235 Query 200894 ACATTGCATCATACGCACTACTGATTCACATGGTAGCCCAACAGGTCAATATGACTGTCG 200953 | || || ||||| | ||| | || ||| | ||||| ||| | | || || | Sbjct 234 ATATCGCCAGCTACGCTTTGCTGGTGCATATGATGGCCCAGCAGTGCGACCTGGAAGTGG 175 Query 200954 GTGATTTCGTATGGACGGGTGGTGACGTACACATCT--ACAGCAATCACGAAGAGCAGGT 201011 ||||||| || ||||| ||||| || ||| ||||| ||||||| ||| |||||| Sbjct 174 GTGATTTTGTCTGGACCGGTGGCGA--TACCCATCTGTACAGCAACCACCTGGAGCAGAC 117 Query 201012 TCGTCTGCAACTGTCTCGTGATCCGCGTCCTTTACCGAAGTTGAAAATTCTTCGTAAGCC 201071 || ||||| ||| | || || ||||| | | |||||| ||| || || ||||| Sbjct 116 GCGCCTGCAGCTGACGCGCGAACCGCGCGCCCTGCCGAAGCTGATTATCAAGCGCAAGCC 57 Query 201072 GGACTCTATCTTCGATTACAAGTTCGAAGACTTTGAGCTTACTGGTTACGAACCGC 201127 ||| ||||||||||| || || || ||||| ||| | |||||||| |||| Sbjct 56 GGAGTCTATCTTCGACTATCGCTTTGATGACTTCGAGATCGAAGGTTACGACCCGC 1 Score = 89.7 bits (98), Expect = 8e-13 Identities = 141/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 200503 GGTGAGTTAGGGCCTGTGTATGGTAAGCAGTGGCGTGATTGGATCGGGC--CAGATGGTC 200560 ||||| | ||||| || ||||| || |||||||| ||| |||| | ||||| | Sbjct 502 GGTGACCTCGGGCCGGTTTATGGCAAACAGTGGCGCAGCTGGG--GGGCAGCGGATGGGC 445 Query 200561 AACACCACGACCAAATCAGCACGGTCATCGACCAGCTACGTAATGATCCGGACAGTCGTC 200620 || |||||| | |||| ||| |||| ||||| | || |||||| || | Sbjct 444 GCCAGATCGACCAGCTGAGCAAGGTGGTCGAACAGCTGAAAAGCGACCCGGACTCGCGCC 385 Query 200621 GCATTATCGTTAGTGCATGGAATGTGGGTGAGTTGGATAAAATGGCTTTAGCGCCTTGCC 200680 |||| |||||| ||||||||| || || || ||||| | ||||| | || || |||| Sbjct 384 GCATCATCGTTTCTGCATGGAACGTCGGCGAACTGGATGAGATGGCGCTGGCCCCGTGCC 325 Query 200681 ATTCCTTCTTCCAGTTCTAC 200700 | | ||||||||||||||| Sbjct 324 ACGCGTTCTTCCAGTTCTAC 305 >seq2677 Length=2322 Score = 152 bits (168), Expect = 8e-32 Identities = 155/203 (76%), Gaps = 3/203 (1%) Strand=Plus/Plus Query 200098 GACCGTACCGGTANNNNNACCACGTCTATTTTCGGTGCACAGATGCGCTTCAATCTACAA 200157 ||||||||||||| ||| || ||||||||| || ||||||||| |||| ||| Sbjct 2094 GACCGTACCGGTACCGGCACCTTATCCATTTTCGGTCACCAAATGCGCTTCGATCTGCAA 2153 Query 200158 GACGGCTTCCCATTGGTGACGACCAAGAAGTGCCATCTCCGTTCCATCATTCACGAGCTG 200217 | |||||||| || || || || || || |||||||| || || || |||||||||||| Sbjct 2154 CAGGGCTTCCCCTTAGTCACCACGAAAAAATGCCATCTGCGCTCGATTATTCACGAGCTG 2213 Query 200218 TTGTGGTTCCTTAACGGTGACACCAATATCAAGTATCTGAACGATAACAATGTCACCATT 200277 ||||||| | || || |||||||||||| || || || || ||||| || || ||| Sbjct 2214 CTGTGGTTTTTAAAGGGAGACACCAATATCGCTTACCTAAAAGAGAACAAGGTAACGATT 2273 Query 200278 TGGGACGAATGGGCGCGAGACGA 200300 ||||| |||||||| |||||| Sbjct 2274 TGGGATGAATGGGC---AGACGA 2293 >seq63939 Length=2243 Score = 127 bits (140), Expect = 3e-24 Identities = 144/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 200098 GACCGTACCGGTANNNNNACCACGTCTATTTTCGGTGCACAGATGCGCTTCAATCTACAA 200157 ||||||||||| | || || ||||| ||| |||||||| ||||| || || Sbjct 1957 GACCGTACCGGCACCGGTACGCTTTCAATTTTTGGTCACCAGATGCGTTTCAACCTGCAG 2016 Query 200158 GACGGCTTCCCATTGGTGACGACCAAGAAGTGCCATCTCCGTTCCATCATTCACGAGCTG 200217 || || || || |||| || |||||||| || ||| |||| || || ||||| |||||| Sbjct 2017 GATGGTTTTCCGCTGGTCACCACCAAGAAATGTCATATCCGCTCGATTATTCATGAGCTG 2076 Query 200218 TTGTGGTTCCTTAACGGTGACACCAATATCAAGTATCTGAACGATAACAATGTCACCATT 200277 ||||||| || || || || ||||| ||| ||||| || || ||||| ||| |||| Sbjct 2077 CTGTGGTTTCTGAAAGGCGATACCAACATCGGTTATCTCAAAGAAAACAACGTCTCCATC 2136 Query 200278 TGGGACGAATGGGCG 200292 ||||| || |||||| Sbjct 2137 TGGGATGAGTGGGCG 2151 >seq93888 Length=1140 Score = 111 bits (122), Expect = 2e-19 Identities = 211/311 (68%), Gaps = 0/311 (0%) Strand=Plus/Plus Query 200845 TGTCAGCTGTATCAGCGTAGCGCTGATATGTTTTTAGGCGTGCCGTTCAACATTGCATCA 200904 || ||||| |||||||| |||| | ||||||||| | || || || || || Sbjct 120 TGCCAGCTCTATCAGCGCTCTTGTGATGTCTTTTTAGGCTTACCCTTTAATATCGCCAGC 179 Query 200905 TACGCACTACTGATTCACATGGTAGCCCAACAGGTCAATATGACTGTCGGTGATTTCGTA 200964 || || |||||| | || ||||| || || ||| || | ||||| ||||| || Sbjct 180 TATGCGCTACTGGTCCATATGGTCGCTCAGCAGTGTGATCTCGAAGTCGGCGATTTTGTT 239 Query 200965 TGGACGGGTGGTGACGTACACATCTACAGCAATCACGAAGAGCAGGTTCGTCTGCAACTG 201024 ||||| || || || ||| |||| |||||| ||| || | | | ||| | Sbjct 240 TGGACAGGGGGCGATACGCACCTCTATTCTAATCACTTAGAACAAGCGCACTTACAATTA 299 Query 201025 TCTCGTGATCCGCGTCCTTTACCGAAGTTGAAAATTCTTCGTAAGCCGGACTCTATCTTC 201084 |||||| || ||| | | || |||||| ||| || |||||||||||||| ||| Sbjct 300 AGTCGTGAGCCTCGTGCACTGCCTAAGTTGGTCATTAAACGCAAGCCGGACTCTATTTTC 359 Query 201085 GATTACAAGTTCGAAGACTTTGAGCTTACTGGTTACGAACCGCATCCTGCGATAAAAGCA 201144 |||||| || || || || ||| | || ||||| ||||| |||||||| ||||| Sbjct 360 GATTACTGTTTTGATGATTTCGAGATAGAAGGCTACGATCCGCACCCTGCGATCAAAGCG 419 Query 201145 CCGGTGGCGAT 201155 || || ||||| Sbjct 420 CCCGTCGCGAT 430 >seq285532 Length=397 Score = 87.8 bits (96), Expect = 3e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 3214 CTCGTAGCTCAGTTGGTCAGAGCGCTCGCCTGATAAGCGGGAGGTCAGTGGTTCAAGTCC 3273 || ||||||||| |||| ||||||| | ||||||||| | |||||| ||||||||||||| Sbjct 90 CTTGTAGCTCAGGTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCGGTGGTTCAAGTCC 149 Query 3274 ACTCGAGACAACCAATTC 3291 |||| | | |||||||| Sbjct 150 ACTCAGGCCTACCAATTC 167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 778471627968000