Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_031127.1 Length=240761 Score E Sequences producing significant alignments: (Bits) Value seq63939 235 8e-57 seq494847 190 3e-43 seq2677 136 6e-27 seq105800 132 7e-26 seq367800 104 4e-17 seq140129 98.7 2e-15 seq89823 98.7 2e-15 seq266160 96.9 5e-15 seq163857 96.9 5e-15 seq479638 93.3 6e-14 >seq63939 Length=2243 Score = 235 bits (260), Expect = 8e-57 Identities = 232/297 (78%), Gaps = 2/297 (1%) Strand=Plus/Plus Query 196014 ATGAAACAGTATTTGGAATTGATGCACACCGTGTTGAACGAAGGTCACG-AGAAAGCTGA 196072 |||||||||||| |||| || ||||| ||| || ||||||| |||| |||||||| Sbjct 1900 ATGAAACAGTATCTGGATTTAATGCAACATGTGCTGCACGAAGG-CACGCCAAAAGCTGA 1958 Query 196073 CCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGCAA 196132 |||||||||||| || || | || ||||| || | ||||||||||| |||||| | Sbjct 1959 CCGTACCGGCACCGGTACGCTTTCAATTTTTGGTCACCAGATGCGTTTCAACCTGCAGGA 2018 Query 196133 AGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACTGTT 196192 || || ||||||||||||||||| || | || | || || || || || || ||| | Sbjct 2019 TGGTTTTCCGCTGGTCACCACCAAGAAATGTCATATCCGCTCGATTATTCATGAGCTGCT 2078 Query 196193 GTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATCTG 196252 |||||| ||||| ||||| ||||||||| ||||| ||||| ||||||||| ||||| Sbjct 2079 GTGGTTTCTGAAAGGCGATACCAACATCGGTTATCTCAAAGAAAACAACGTCTCCATCTG 2138 Query 196253 GGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGGCG 196309 |||||||||||| ||||| |||||||||| ||||| || || || || |||||||| Sbjct 2139 GGATGAGTGGGCGGATGAGAATGGCGATCTCGGCCCGGTGTATGGCAAACAGTGGCG 2195 >seq494847 Length=1062 Score = 190 bits (210), Expect = 3e-43 Identities = 222/297 (75%), Gaps = 2/297 (1%) Strand=Plus/Minus Query 196014 ATGAAACAGTATTTGGAATTGATGCACACCGTGTTGAACGAAGGTCACGAG-AAAGCTGA 196072 |||||||||||| ||| || ||||| |||| | | | ||| |||| ||| ||| Sbjct 763 ATGAAACAGTATCTGGCGTTAATGCAGCACGTGCTCGA-GCAGGGCACGCCCAAAAATGA 705 Query 196073 CCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGCAA 196132 ||| ||||| || ||||| | || ||||| || ||||||||||||| | |||| | Sbjct 704 CCGCACCGGAACCGGCACGCTGTCGATTTTTGGTCATCAGATGCGTTTCAATCTGCAGGA 645 Query 196133 AGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACTGTT 196192 || || ||||||||||||||||| |||| || |||| |||||||| || || ||| | Sbjct 644 CGGTTTTCCGCTGGTCACCACCAAGAAGTGCCATTTGCGCTCTATCATTCATGAGCTGCT 585 Query 196193 GTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATCTG 196252 ||||||||| ||||| ||||| |||||| || ||||| || || || || ||||| Sbjct 584 GTGGTTCCTTAACGGTGACACTAACATCGCCTACCTGAAGGAAAATAAGGTGTCGATCTG 525 Query 196253 GGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGGCG 196309 ||| |||||||| |||||| | || || || || || || || || || |||||||| Sbjct 524 GGACGAGTGGGCCGATGAAAAGGGTGACCTCGGGCCGGTTTATGGCAAACAGTGGCG 468 Score = 168 bits (186), Expect = 1e-36 Identities = 210/285 (74%), Gaps = 2/285 (1%) Strand=Plus/Minus Query 196749 CTGTCCTGTCAGCTTTACCAGCGCAG-TGCAGACGTCTTCCTCGGTGTCCCGTTCAACAT 196807 || ||||| || || || |||||| ||| || |||||||||| | |||||||| || Sbjct 289 CTCTCCTGCCAACTGTATCAGCGCTCCTGC-GATATCTTCCTCGGCCTGCCGTTCAATAT 231 Query 196808 CGCTTCGTACGCTCTGTTGGTTCACATGGTGGCACAGCAGGTCAATATGGTGGCGGGTGA 196867 ||| |||||| || |||| || ||| |||| |||||| | | ||| | |||||| Sbjct 230 CGCCAGCTACGCTTTGCTGGTGCATATGATGGCCCAGCAGTGCGACCTGGAAGTGGGTGA 171 Query 196868 TTTCGTCTGGACGGGCGGCGATACCCATCTGTACTCTAACCATCTGGAACAGGCCACGTT 196927 ||| |||||||| || |||||||||||||||||| ||||| ||||| ||| | | Sbjct 170 TTTTGTCTGGACCGGTGGCGATACCCATCTGTACAGCAACCACCTGGAGCAGACGCGCCT 111 Query 196928 GCAGCTCTCCCGTGTACCGCATGATCTGCCTAAGCTCGTTATCAAACGTAAACCGGATTC 196987 |||||| | || | ||||| | ||||| ||||| ||||||| || || ||||| || Sbjct 110 GCAGCTGACGCGCGAACCGCGCGCCCTGCCGAAGCTGATTATCAAGCGCAAGCCGGAGTC 51 Query 196988 CATTTTCGACTATAAGTTCGAAGATTTTGAAATCGTGGGTTACGA 197032 || ||||||||| || || || || || |||| |||||||| Sbjct 50 TATCTTCGACTATCGCTTTGATGACTTCGAGATCGAAGGTTACGA 6 >seq2677 Length=2322 Score = 136 bits (150), Expect = 6e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 196071 GACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGC 196130 ||||||||||| || |||||| | || |||||||| | || ||||| || || |||| Sbjct 2094 GACCGTACCGGTACCGGCACCTTATCCATTTTCGGTCACCAAATGCGCTTCGATCTGCAA 2153 Query 196131 AAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACTG 196190 | || ||||| | |||||||| ||||| | || ||||| || || || ||||| ||| Sbjct 2154 CAGGGCTTCCCCTTAGTCACCACGAAAAAATGCCATCTGCGCTCGATTATTCACGAGCTG 2213 Query 196191 TTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATC 196250 ||||||| | || || |||||||| ||| || || ||||| ||||| || | || Sbjct 2214 CTGTGGTTTTTAAAGGGAGACACCAATATCGCTTACCTAAAAGAGAACAAGGTAACGATT 2273 Query 196251 TGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGT 196298 |||||||| |||||||| || | ||| | | || || || || ||| Sbjct 2274 TGGGATGAATGGGCAGACGAGCAGGGCAACTTAGGTCCGGTTTATGGT 2321 >seq105800 Length=3879 Score = 132 bits (146), Expect = 7e-26 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 196071 GACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGC 196130 || ||||| ||||| ||||| | | | || || ||||| ||||||||||| ||| Sbjct 2663 GATCGTACGGGCACAGGCACGCGCAGTGTATTTGGCTATCAAATGCGTTTTGATCTG--- 2719 Query 196131 AAA---GGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAA 196187 ||| || || ||| ||||||||||||||||||| || ||||||| || ||||| ||| Sbjct 2720 AAAGCTGGCTTTCCGTTGGTCACCACCAAAAAGTTACATATGCGATCCATTATCCATGAA 2779 Query 196188 CTGTTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGT 196247 || | |||||| | || || || || |||||| ||| ||||||| || || || Sbjct 2780 CTAATCTGGTTCTTAAAAGGTGAGACGAACATCAGCTATTTGAAAGAAAATGGTGTTAGC 2839 Query 196248 ATCTGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGG 196297 || |||||||| ||||| |||||| | || || | || || || || || Sbjct 2840 ATTTGGGATGAATGGGCTGATGAAAACGGGAATTTAGGTCCGGTTTATGG 2889 >seq367800 Length=224 Score = 104 bits (114), Expect = 4e-17 Identities = 108/139 (78%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 196071 GACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGC 196130 || || |||||||| ||||| | | ||||| | |||||||| || || ||| || Sbjct 87 GATCGCACCGGCACCGGCACGCGCAGCGTGTTCGGTTGGCAGATGCGCTTCGATCTG-GC 145 Query 196131 AAAGGGTTCCCGC-TGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACT 196189 |||||| || | | ||||||||||| ||| |||||||||| || ||||||||||| || Sbjct 146 GCAGGGTTTCCCCATCGTCACCACCAAGAAGCTGCACCTGCGCTCGATCATCCACGAGCT 205 Query 196190 GTTGTGGTTCCTGAACGGC 196208 | ||||||||||||| ||| Sbjct 206 GCTGTGGTTCCTGAAGGGC 224 >seq140129 Length=10074 Score = 98.7 bits (108), Expect = 2e-15 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 5487 CTCTGTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAGTCC 5546 |||||||||||||| |||||||||| ||||||||||||| |||||| | ||||||||||| Sbjct 7963 CTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCC 8022 Query 5547 TGCCAGAGTCGCCACATTT 5565 | ||||| |||| |||| Sbjct 8023 AGTCAGAGGAGCCATATTT 8041 >seq89823 Length=2041 Score = 98.7 bits (108), Expect = 2e-15 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 5487 CTCTGTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAGTCC 5546 |||||||||||||| |||||||||| ||||||||||||| |||||| | ||||||||||| Sbjct 496 CTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCC 555 Query 5547 TGCCAGAGTCGCCACATTT 5565 | ||||| |||| |||| Sbjct 556 AGTCAGAGGAGCCAAATTT 574 >seq266160 Length=9069 Score = 96.9 bits (106), Expect = 5e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 5487 CTCTGTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAGTCC 5546 |||||||||||||| |||||||||| ||||||||||||| |||||| | ||||||||||| Sbjct 377 CTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCC 318 Query 5547 TGCCAGAGTCGCCACATT 5564 | ||||| |||| ||| Sbjct 317 AGTCAGAGGAGCCAAATT 300 >seq163857 Length=4767 Score = 96.9 bits (106), Expect = 5e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 5487 CTCTGTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAGTCC 5546 |||||||||||||| |||||||||| ||||||||||||| |||||| | ||||||||||| Sbjct 4441 CTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCC 4382 Query 5547 TGCCAGAGTCGCCACATT 5564 | ||||| |||| ||| Sbjct 4381 AGTCAGAGGAGCCAGATT 4364 >seq479638 Length=449 Score = 93.3 bits (102), Expect = 6e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 5487 CTCTGTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAGTCC 5546 ||||||||||||||||||||||||| ||||||||||||| |||||| | ||||||||||| Sbjct 23 CTCTGTAGTTCAGTTGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCC 82 Query 5547 TGCCAG 5552 | ||| Sbjct 83 AGTCAG 88 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 765500280866360