Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_031902.1 Length=125114 Score E Sequences producing significant alignments: (Bits) Value seq79071 116 3e-21 seq213894 102 6e-17 seq209331 96.9 3e-15 >seq79071 Length=852 Score = 116 bits (128), Expect = 3e-21 Identities = 130/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 28895 AGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGCGTCAATGCGTTAAATCGAAC 28954 |||||| ||||| |||| |||||| ||| || ||| |||||| || |||||| || || Sbjct 193 AGTAAAGGTACGGGTAATTACGTCGCGCTGCTGCTCAGGCGTCAGTGAGTTAAAACGCAC 252 Query 28955 AGCATAGCCAGAGACACGGATGGTCAACTGAGGATATTTTTCAGGATGTTTCTGCGCATC 29014 |||||||| || |||||||| |||| ||| ||||| |||||||||||||| ||||| Sbjct 253 GGCATAGCCTGAAACACGGATAGTCAGCTGCGGATAGTTTTCAGGATGTTTAACTGCATC 312 Query 29015 CAAAAGCTGATCACGGCTTAACACATTGACATTTAGGTGCTGACCACCCTCGAC 29068 ||| || || | | || ||||| || || ||||| ||||| || || Sbjct 313 TTCCAGCGTTTCGCGACGCAGAACGTTGACGTTCAGATGCTGTCCACCTTCAAC 366 >seq213894 Length=28734 Score = 102 bits (112), Expect = 6e-17 Identities = 127/174 (73%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 28892 CTGAGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGCGTCAATGCGTTAAATCG 28951 |||||| || ||||| | || || || | ||| ||||| |||| | ||| || || Sbjct 8980 CTGAGTGAAGGTACGGGTGATCACATCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAGCG 8921 Query 28952 AACAGCATAGCCAGAGACACGGATGGTCAACTGAGGATATTTTTCAGGATGTTTCTGCGC 29011 || |||||||| || || || ||||| ||||| ||||||||||| || | || | ||| Sbjct 8920 TACCGCATAGCCCGACACGCGAATGGTTAACTGCGGATATTTTTCCGGGTCTTCCATCGC 8861 Query 29012 ATCCAAAAGCTGATCACGGCTTAACACATTGACATTTAGGTGCTGACCACCCTC 29065 |||| ||| |||||| | | ||| ||||| || ||||||||||| || || Sbjct 8860 TTCCAGCAGCATTTCACGGTTCATCACGTTGACGTTGAGGTGCTGACCCCCTTC 8807 >seq209331 Length=9407 Score = 96.9 bits (106), Expect = 3e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 28895 AGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGCGTCAATGCGTTAAATCGAAC 28954 ||| || || || |||| || || | ||| ||||| |||| || |||||| || || Sbjct 315 AGTGAAGGTTCGGGTAATCACATCCTGCTGCTGTTCTTTAGTCAGTGAGTTAAAGCGGAC 374 Query 28955 AGCATAGCCAGAGACACGGATGGTCAACTGAGGATATTTTTCAGGATGTTTCTGCGCATC 29014 || || || || || || ||||||| ||| |||||||| || ||||||| | ||| || Sbjct 375 CGCGTAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCTGGATGTTCCATCGCGTC 434 Query 29015 CAAAAGCTGATCACGGCTTAACACATTGACATTTAGGTGCTGACCACCCTCGA 29067 || ||| |||||| | | || || || || ||||||||||| || |||| Sbjct 435 CAGCAGCATTTCACGGTTCATAACGTTAACGTTGAGGTGCTGACCGCCTTCGA 487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397804837403575