Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_031924.1 Length=47564 Score E Sequences producing significant alignments: (Bits) Value seq89870 158 4e-34 seq497144 134 4e-27 seq153502 123 8e-24 seq136258 123 8e-24 seq226697 89.7 2e-13 seq83212 82.4 2e-11 >seq89870 Length=1429 Score = 158 bits (174), Expect = 4e-34 Identities = 272/395 (69%), Gaps = 0/395 (0%) Strand=Plus/Minus Query 26821 AGCCTCAGCGACACCACGAAGCTGTGGGAAACATTGACGTCATCACTGAAGGAGGCTGGC 26880 |||||||| || || | ||| |||||| | | || || |||| || ||| |||| Sbjct 1314 AGCCTCAGTGATACTGAAAGGCTATGGGAATCTCTCACTTCTGCACTAAAAGAGACTGGA 1255 Query 26881 GCGACAAATGCGCAGGTTCTGAACCTTACCGATACCCTGCAAAAAATAGGTCGAATCGGC 26940 ||||| |||| ||| | | ||| || || ||||| || || || || || Sbjct 1254 GCGACTAATGGGCAAATAGTTTCCCTGACTTCCACACTGCAGAAGATCGGCACCATAGGT 1195 Query 26941 GGGTCATCAACAGAAGAAATGGCGAACGCCCTGCGTCAGTTCGGTCAGTCAATTGCTTCT 27000 ||||||||| |||| |||||| | || || || || || || || |||||||| ||| Sbjct 1194 GGGTCATCAGCAGAGGAAATGTCTAATGCGCTTCGCCAATTTGGGCAGTCAATAGCTGGC 1135 Query 27001 GGTACAATCCGCGCCGAAGAATTTAACTCCATCCTTGAGCAGATGCCTGAGCTTGCTCGC 27060 || | | || |||||||| |||||||| |||||||||||||||||||| || | Sbjct 1134 GGCGTCGTTAGGGCGGAAGAATTCAACTCCATACTTGAGCAGATGCCTGAGCTAGCAAGG 1075 Query 27061 CAGATTGCGGCGGGTCTTGGTATTTCAATGGGTGAACTTCGCGCCAGAATGCTCGATGGC 27120 || || || ||| | || | || || || || |||||| |||||||| || ||| Sbjct 1074 CAAATCGCCAGGGGGATGGGGGTGTCCATAGGGGAGCTTCGCAAGAGAATGCTGGAAGGC 1015 Query 27121 AAACTGACAGCAGAAGATGCGCTAAATGCCATTCAGGACAGGACAAGCGTGGTCAATGCT 27180 || || || || || |||||||| || || || || | | || | || | ||| Sbjct 1014 AAGCTTACCGCTGAGGATGCGCTTAACGCTATACAAAAGCAGTCATCATTAGTTAGCGCT 955 Query 27181 GAGTTTGAAAAACTTCCTCGCACAATGGATCAGGC 27215 ||||||| |||| | || ||||| ||| | ||||| Sbjct 954 GAGTTTGCAAAAATGCCCCGCACTATGCAGCAGGC 920 >seq497144 Length=1636 Score = 134 bits (148), Expect = 4e-27 Identities = 234/338 (69%), Gaps = 7/338 (2%) Strand=Plus/Minus Query 36440 ACCACCAAGCATCTGCATCACGCCGCCCATCTGCGGAATGACAATCTCTGTGGTGTATCT 36499 ||| || ||||||||||| |||||| | | || |||| || |||||||| | Sbjct 1451 ACCGCCCAGCATCTGCATGGTGCCGCCAACGTT---AACCACAACTTCGGTGGTGTACTT 1395 Query 36500 GTCTATTCCGTTGCTGTCAGTCCATTTACGAGTACGAAGCTGGCCTTCGATGTAAACCTG 36559 || | || ||||||||||||||| || | || ||||||||| |||||||| Sbjct 1394 CTCAACGCCAGCCTGGTCAGTCCATTTACGGGTCTGCAGTGCGCCTTCGATATAAACCTG 1335 Query 36560 CGAACCTTTTCGAAGGTATTCTCCTGCAACTTCCGCAAGTTTCCCGAATATGACAATACG 36619 || ||||| || |||||||| || || ||||| || || || ||||| | |||| || Sbjct 1334 AGAGCCTTTACGCAGGTATTCACCGGCCACTTCAGCCAGCTTGCCGAACAGCACAACGCG 1275 Query 36620 ATGCCACTCTGTCTGTTCTTTCTTTTCTCCTGTCTGCTTATCTTTCCACTGCTCAGATGT 36679 ||||| || || | ||||| |||| || |||||||| || ||| || || || Sbjct 1274 GTGCCATTCAGTTTTCTCTTTGGTTTCGCCGGTCTGCTTGTCGCGCCAGGATTCGGAGGT 1215 Query 36680 TGCAACGGAAATGTTGACAATTGCAGAACCTGATGCTGAA--TATTTAACTTCAGGGTCG 36737 || | | |||||| ||| ||| || || | | | || |||||| ||||| Sbjct 1214 AGCCAGAGTGATGTTGGCAACGGCACCGCC--ATTCGGCATGTAGCGAACTTCCGGGTCC 1157 Query 36738 TTTCCGAGAGTTCCGACAATAATTACTTTATTTACGCC 36775 | || ||| ||||||| | ||||||||| |||||||| Sbjct 1156 TGCCCCAGATTTCCGACTAAAATTACTTTGTTTACGCC 1119 >seq153502 Length=4143 Score = 123 bits (136), Expect = 8e-24 Identities = 187/262 (71%), Gaps = 8/262 (3%) Strand=Plus/Plus Query 36521 CCATTTACGAGTACGAAGCTGGCCTTCGATGTAAACCTGCGAACCTTTTCGAAGGTATTC 36580 |||||| || ||||| || || |||||||| |||||||| || ||||| || || ||||| Sbjct 2000 CCATTTGCGCGTACGCAGTTGACCTTCGATATAAACCTGAGAGCCTTTACGCAGATATTC 2059 Query 36581 TCCTGCAACTTCCGCAAGTTTCCCGAATATGACAATACGATGCCACTCTGTCTGTTCTTT 36640 || |||||||| || | ||| ||||| | |||| ||| ||||| || || ||||| Sbjct 2060 GCCAGCAACTTCTGCTAATTTACCGAACAACACAACACGGTGCCATTCAGTAATCTCTTT 2119 Query 36641 CTTTTCTCCTGTCTGCTTATCTTTCCACTGCTCAGATGTTGCAACGGAAATGTT-GACAA 36699 ||||| || || |||||||| ||| ||||| ||||| | | |||||| | || Sbjct 2120 ATTTTCACCGGTTTGCTTATCACGCCAGCTTTCAGAGGTTGCCAGTGTAATGTTTGTCA- 2178 Query 36700 TTGCAGAACCTG-ATGCTGAATATTTA--ACTTCAGGGTCGTTTCCGAGAGTTCCGACAA 36756 ||| ||| || | |||| ||||| || || | || | | | ||||||| Sbjct 2179 ---CAGCCCCTCCATTTGGCATATACCGGACTTCTGGATCTTGACCCAAATTACCGACAA 2235 Query 36757 TAATTACTTTATTTACGCCGCG 36778 ||| ||||| ||||||||||| Sbjct 2236 GAATCACTTTGTTTACGCCGCG 2257 >seq136258 Length=1331 Score = 123 bits (136), Expect = 8e-24 Identities = 182/258 (71%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 36521 CCATTTACGAGTACGAAGCTGGCCTTCGATGTAAACCTGCGAACCTTTTCGAAGGTATTC 36580 ||||||||| || || |||||||||||||| || |||||||| |||||| |||||||| Sbjct 94 CCATTTACGGGTGCGCAGCTGGCCTTCGATATAGACCTGCGACCCTTTTTTCAGGTATTC 153 Query 36581 TCCTGCAACTTCCGCAAGTTTCCCGAATATGACAATACGATGCCACTCTGTCTGTTCTTT 36640 || || ||||| || ||||| || || | || | ||| ||||| || || ||||| Sbjct 154 ACCCGCGACTTCAGCCAGTTTGCCAAACAGAACCACACGGTGCCATTCAGTGATCTCTTT 213 Query 36641 CTTTTCTCCTGTCTGCTTATCTTTCCACTGCTCAGATGTTGCAACGGAAATGTTGACAAT 36700 ||||| || |||||||| || ||| || || || || | | ||||||| ||| Sbjct 214 GTTTTCACCGGTCTGCTTGTCGCGCCAGCTTTCCGACGTAGCCAGCGTAATGTTGGCAAC 273 Query 36701 TGCAGAACCTGATGCTGAATATTTAACTTCAGGGTCGTTTCCGAGAGTTCCGACAATAAT 36760 || ||| || ||| ||||| || || | || ||| | ||||||| ||| Sbjct 274 AGCGCCACCATTTGGCATATAACGTACTTCCGGATCCTGACCCAGATTCCCGACAAGAAT 333 Query 36761 TACTTTATTTACGCCGCG 36778 ||||| || ||||| || Sbjct 334 CACTTTGTTAACGCCACG 351 >seq226697 Length=878 Score = 89.7 bits (98), Expect = 2e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 36521 CCATTTACGAGTACGAAGCTGGCCTTCGATGTAAACCTGCGAACCTTTTCGAAGGTATTC 36580 |||||| | ||| |||| ||||| || || || || |||||||||| | ||||| Sbjct 727 CCATTTTCTAGTTTGAAGGGATCCTTCAATATATACTTGAGAACCTTTTCTCAAATATTC 786 Query 36581 TCCTGCAACTTCCGCAAGTTTCCCGAATATGACAATACGATGCCACTCTGTCTGTTCTTT 36640 ||| |||| ||| || | ||| || |||| || || | |||||| ||||| | ||||| Sbjct 787 TCCAGCAATTTCAGCCAATTTTCCAAATAATACTATTCTATGCCATTCTGTTTTCTCTTT 846 Query 36641 CTTTTCTCCTGTCTGCTTATCTTTCCA 36667 ||||| || || | ||||||||||| Sbjct 847 ATTTTCACCAGTATTTTTATCTTTCCA 873 >seq83212 Length=3491 Score = 82.4 bits (90), Expect = 2e-11 Identities = 178/263 (68%), Gaps = 5/263 (2%) Strand=Plus/Plus Query 28791 GAGAGCAACCGAATAATGGCTATCATCAAATACCCTGACTGGCTGCCATTGGCGCAGCGC 28850 ||| || || ||||||||||||| | || ||||||||||| || |||| ||| Sbjct 72 GAGGGCTACAGAATAATGGCTATTG---ATTATCCTGACTGGCTCCCGCTGGCTCAGAAG 128 Query 28851 GCCAGTAAAAACCTGACACAGCAAACCCCGTT-CCGCAGCGATCAACCTGCTGTCGGAGC 28909 | | ||||||| | || ||| | | ||| ||||| || || || || || || Sbjct 129 TCTAATAAAAACGTCAC-CAGTGATACGGGTTTCCGCACTGACCATCCACAGGTTGGTGC 187 Query 28910 GCCGATTTTTCAGAAGATGACAACTGATATTGCGGCGACATGGAGTCTGACGTGGGTTTT 28969 ||| || || |||||| | || || || | ||| || ||||| ||| | || Sbjct 188 GCCAATCTTCCAGAAGCTTACTGACGACCTTAAATCATCATTCAGCCTGACATGGATATT 247 Query 28970 CACGCTGGCGGAGGAGCGTGCATTTATCCAGTGGTTGCGTAGTCCTAACTACCTCAACAA 29029 ||| | | || | ||||| ||| |||||||||||| ||||||||||| || | || Sbjct 248 CACACGTGATCAGCACCGTGCCTTTTACCAGTGGTTGCGCAGTCCTAACTATCTGGATAA 307 Query 29030 ATGCAACAACTGGTTCACCATGA 29052 |||| | ||||||| ||||| Sbjct 308 CGGCAATCAGTGGTTCAGCATGA 330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151181612864652