Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_031928.1 Length=169936 Score E Sequences producing significant alignments: (Bits) Value seq65234 156 5e-33 seq260686 113 5e-20 seq93888 104 3e-17 >seq65234 Length=1614 Score = 156 bits (172), Expect = 5e-33 Identities = 269/388 (69%), Gaps = 2/388 (1%) Strand=Plus/Plus Query 143390 CATAGTCCATATGACGAATACGGTTCTCATCGACACCCTTGTTGTTTTTCAGAACGAGCA 143449 |||| || | |||||| | | || || || | || | || ||||| | ||| | | Sbjct 672 CATAATCAAGATGACGTACTCTATTTTCTTCAATTCCTCTATTATTTTTTAAAACTAATA 731 Query 143450 GATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCACGGATTC 143509 |||||||| ||| | |||||| || || ||| || |||| || || || || | | || Sbjct 732 AATTTTCAATTTCTAGATGCCATATTGGGTAAAAAACAGTTGCGGCCCCTCCTCTAACTC 791 Query 143510 CACCTTGTGAACATGATTTAACAGCAGTCTGGAAATGTTTCCAGAATGGAATAACACCGG 143569 ||||||| ||||| ||||| || || | ||||| ||||| | || |||||| |||| Sbjct 792 CACCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTGTTTATAAAAAGGAATACATCCGG 851 Query 143570 TATGCTTGACTTCGCCCATGCCAATACGAGAACCTTCAGCACGAATCATACCAACGTTGA 143629 |||| |||| || | | ||| || ||| ||| ||||| |||| |||| | Sbjct 852 TATGAAATGCTTCTCCATTTCTGATAGGACTTCCTAAAGCTCGAATTTGACCAGCGTTAA 911 Query 143630 TACCAATACCGGCACGTTTAGAAATGTATTCAATTATTGAGTTAGCAGTTTTGTTAATAG 143689 | || || || || |||| ||||| |||| | |||| ||| || ||||||| Sbjct 912 TGCCTATTCCTGCTCGTTGAGAAACATATTTTACAATTGCACTAGTTGTAGCATTAATAG 971 Query 143690 A-TTTCAGTGAGTCGCCTGCTTCAATAACCACACAAGAACTAAATTGACGGGTTGGTGTA 143748 | ||| | | | || | |||||| | ||||||||||||||||||||| |||||||| Sbjct 972 AGTTTAAATTA-TCTGCACATTCAATTAACACACAAGAACTAAATTGACGAGTTGGTGTT 1030 Query 143749 CGTGCTCCAGCCATAATAGGAGTTGGTA 143776 | | |||| | |||||| || || |||| Sbjct 1031 CTTACTCCTGACATAATCGGTGTGGGTA 1058 >seq260686 Length=13603 Score = 113 bits (124), Expect = 5e-20 Identities = 293/447 (66%), Gaps = 0/447 (0%) Strand=Plus/Minus Query 143367 CATCAGGTCGTTCAACTGGATTCCATAGTCCATATGACGAATACGGTTCTCATCGACACC 143426 |||||| | ||||| ||| | || |||||||||||||| | ||||| | || || || Sbjct 5594 CATCAGCTTGTTCAGCTGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCC 5535 Query 143427 CTTGTTGTTTTTCAGAACGAGCAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 143486 |||||| ||||| || ||||| |||| ||||||| |||||| || || || | Sbjct 5534 GCGGTTGTTCTTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAG 5475 Query 143487 AGTAGCAGCGCCGCCACGGATTCCACCTTGTGAACATGATTTAACAGCAGTCTGGAAATG 143546 || || || ||||| || | || || || || || || || || || |||||||| || Sbjct 5474 GGTCGCTGCACCGCCGCGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTG 5415 Query 143547 TTTCCAGAATGGAATAACACCGGTATGCTTGACTTCGCCCATGCCAATACGAGAACCTTC 143606 || |||| ||||| ||||| || |||| || || || | || Sbjct 5414 CTTATAGAACGGAATGCAGCCGGTGTGGAATGCTTCACCGCCGCGGATCGGGCTGCCCAG 5355 Query 143607 AGCACGAATCATACCAACGTTGATACCAATACCGGCACGTTTAGAAATGTATTCAATTAT 143666 ||||| || ||| |||| || || ||||||||||| | ||||| ||| | | || Sbjct 5354 CGCACGGATGCGACCGGCGTTAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAAT 5295 Query 143667 TGAGTTAGCAGTTTTGTTAATAGATTTCAGTGAGTCGCCTGCTTCAATAACCACACAAGA 143726 | | | | || |||||| || | || |||||| ||||| | || || || Sbjct 5294 CGCGCTGGAGGTGGCGTTAATGGAATCAAGGCTGTCGCCGCACTCAATCAGTACGCAGGA 5235 Query 143727 ACTAAATTGACGGGTTGGTGTACGTGCTCCAGCCATAATAGGAGTTGGTAATGAAACCTG 143786 || || || || || || || || | || | |||||| || || || | |||| || Sbjct 5234 GCTGAACTGGCGCGTCGGGGTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAATCTT 5175 Query 143787 ACGGGTACTTACAGCATCATAAAAACG 143813 | ||| | ||||| || ||||| Sbjct 5174 AAAGGTGGAGATCGCATCGTAGAAACG 5148 >seq93888 Length=1140 Score = 104 bits (114), Expect = 3e-17 Identities = 184/264 (70%), Gaps = 6/264 (2%) Strand=Plus/Minus Query 144985 TTGTTCAACGTGGTTAGAATAGATGTGCGTATTGCCGCCTGAGAACACTAAATCGCCTGG 145044 |||||| | ||| |||||||||| |||||||| ||| |||| | || |||||||| | Sbjct 284 TTGTTCTAAGTGATTAGAATAGAGGTGCGTATCGCCCCCTGTCCAAACAAAATCGCC--G 227 Query 145045 AATA--AGATTACACATCTTAGCTACAATATGCACAAG-AGCGGCGTAAGAGGCGATATT 145101 | | |||| |||| || ||| || ||||| || || |||| | || ||||||||| Sbjct 226 ACTTCGAGATCACACTGCTGAGCGACCATATGGACCAGTAGCG-CATAGCTGGCGATATT 168 Query 145102 AAATGGCAATCCTAAGAACACGTCAACAGAACGCTGATACCACTGGAGGTCAAGATGACC 145161 ||| || || ||||| || || ||| ||| |||||||| |||| || | || Sbjct 167 AAAGGGTAAGCCTAAAAAGACATCACAAGAGCGCTGATAGAGCTGGCAACTGAGTTTGCC 108 Query 145162 ATTACGGACGTTGAACTGGTAAAAACAATGGCATGGCGGAAGAGCCATCTGGTTAATTTC 145221 ||| ||||| ||| ||| |||| |||||| || | || ||||| | | | || Sbjct 107 ATTCACGACGTAGAATTGGAAAAAGGCATGGCAAGGTGCCAGCGCCATTTTATCTAACTC 48 Query 145222 AGCCGGGTTCCATGCTGATACGAT 145245 | |||||||| |||||||| Sbjct 47 TCCAACATTCCATGCCGATACGAT 24 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540274573959360