Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_031934.1 Length=168929 Score E Sequences producing significant alignments: (Bits) Value seq65234 152 6e-32 seq1462 152 6e-32 seq260686 120 3e-22 seq93888 104 3e-17 >seq65234 Length=1614 Score = 152 bits (168), Expect = 6e-32 Identities = 240/344 (70%), Gaps = 0/344 (0%) Strand=Plus/Plus Query 142512 TTGTTTTTCAGAACGAGCAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTA 142571 || ||||| | ||| | | |||||||| ||| | |||||| || || ||| || |||| Sbjct 713 TTATTTTTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAACAGTT 772 Query 142572 GCAGCGCCGCCACGGATTCCACCTTGTGAACATGATTTAACAGCAGTCTGGAAATGTTTC 142631 || || || || | | ||||||||| ||||| ||||| || || | ||||| ||||| Sbjct 773 GCGGCCCCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTGTTTA 832 Query 142632 CAGAATGGAATAACACCGGTATGCTTGACTTCGCCCATGCCAATACGAGAACCTTCAGCA 142691 | || |||||| |||||||| |||| || | | ||| || ||| ||| Sbjct 833 TAAAAAGGAATACATCCGGTATGAAATGCTTCTCCATTTCTGATAGGACTTCCTAAAGCT 892 Query 142692 CGAATCATACCAACGTTGATACCAATACCTGCACGTTTAGAAATGTATTCAATTATTGAG 142751 ||||| |||| |||| || || || ||||| |||| ||||| |||| | |||| Sbjct 893 CGAATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAATTGCA 952 Query 142752 TTAGCAGTTTTGTTAATAGATTTCAGCGAGTCGCCGGCTTCAATAACCACACAAGAACTA 142811 ||| || |||||||| || | || | |||||| | ||||||||||||| Sbjct 953 CTAGTTGTAGCATTAATAGAGTTTAAATTATCTGCACATTCAATTAACACACAAGAACTA 1012 Query 142812 AATTGACGGGTTGGTGTACGTGCTCCAGCCATAATAGGAGTAGG 142855 |||||||| |||||||| | | |||| | |||||| || || || Sbjct 1013 AATTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGG 1056 >seq1462 Length=4781 Score = 152 bits (168), Expect = 6e-32 Identities = 317/468 (68%), Gaps = 3/468 (1%) Strand=Plus/Minus Query 142429 TTTTACCGAAACGTTCCATCATCAGGTCGTTCAACTGGATTCCGTAGTCCATATGACGAA 142488 ||||||| | ||||| ||| || | ||| | || | ||||| || | ||||| | Sbjct 1464 TTTTACC-AGACGTTGATACATGAGTTTGTTGATTTGTACGCCGTAATCTAGGTGACGGA 1406 Query 142489 TACGGTTCTCATCGACACCCTTGTTGTTTTTCAGAACGAGCAGATTTTCAACTTCCAAAT 142548 |||||| | || ||||| ||| |||||||| || | | |||||| |||||| | Sbjct 1405 CACGGTTACCTTCAACACCACGGTTATTTTTCAGGACTAATAAGCTTTCAATTTCCAAGT 1346 Query 142549 GCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCACGGATTCCACCTTGTGAACATGATT 142608 |||| ||||| ||| | || || || || || || | || ||||| || || |||| Sbjct 1345 GCCACATAGGGTAAAACAGTGTCGCGGCACCCCCGCGTACGCCGCCTTGCGAGCAAGATT 1286 Query 142609 TAACAGCAGTCTGGAAATGTTTCCAGAATGGAATAACACCGGTATGCTTGACTTCGCCCA 142668 | || || |||||||| ||||| |||| || ||| ||||||||| |||| || Sbjct 1285 TCACGGCCGTCTGGAAGTGTTTGTAGAACGGGATACAACCGGTATGGAAAGCTTCACCAC 1226 Query 142669 TGCCAATACGAGAACCTTCAGCACGAATCATACCAACGTTGATACCAATACCTGCACGTT 142728 | || | ||| |||||||| ||| | |||||||| || ||||| |||| Sbjct 1225 CACGGATTGGGCTGCCTAGCGCACGAATACGGCCAGCATTGATACCGATCCCTGCGCGTT 1166 Query 142729 TAGAAATGTATTCAATTATTGAGTTAGCAGTTTTGTTAATAGATT-TCAGCGAGTCGCCG 142787 |||| ||||| || || | ||| ||| ||| ||||| | | ||| | ||||| Sbjct 1165 GTGAAACGTATTTAACGATAGCACTAGAAGTGGCGTTGATAGAGTCTAAGCTA-TCGCCA 1107 Query 142788 GCTTCAATAACCACACAAGAACTAAATTGACGGGTTGGTGTACGTGCTCCAGCCATAATA 142847 || |||| ||| || || || ||||| || || || || ||| | |||||||| || Sbjct 1106 CACTCGATAAGCACGCATGAGCTGAATTGGCGAGTCGGCGTCCGTACCCCAGCCATGATT 1047 Query 142848 GGAGTAGGCAATGAAACCTGACGAGTACTTACAGCATCATAAAAACGA 142895 || ||||| || |||| | | || || ||||||||||| ||| Sbjct 1046 GGCGTAGGTAAGGAAATTTTAAAGGTCGACACGGCATCATAAAAGCGA 999 >seq260686 Length=13603 Score = 120 bits (132), Expect = 3e-22 Identities = 278/419 (66%), Gaps = 0/419 (0%) Strand=Plus/Minus Query 142448 CATCAGGTCGTTCAACTGGATTCCGTAGTCCATATGACGAATACGGTTCTCATCGACACC 142507 |||||| | ||||| ||| | ||||||||||||||||| | ||||| | || || || Sbjct 5594 CATCAGCTTGTTCAGCTGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCC 5535 Query 142508 CTTGTTGTTTTTCAGAACGAGCAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 142567 |||||| ||||| || ||||| |||| ||||||| |||||| || || || | Sbjct 5534 GCGGTTGTTCTTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAG 5475 Query 142568 AGTAGCAGCGCCGCCACGGATTCCACCTTGTGAACATGATTTAACAGCAGTCTGGAAATG 142627 || || || ||||| || | || || || || || || || || || |||||||| || Sbjct 5474 GGTCGCTGCACCGCCGCGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTG 5415 Query 142628 TTTCCAGAATGGAATAACACCGGTATGCTTGACTTCGCCCATGCCAATACGAGAACCTTC 142687 || |||| ||||| ||||| || |||| || || || | || Sbjct 5414 CTTATAGAACGGAATGCAGCCGGTGTGGAATGCTTCACCGCCGCGGATCGGGCTGCCCAG 5355 Query 142688 AGCACGAATCATACCAACGTTGATACCAATACCTGCACGTTTAGAAATGTATTCAATTAT 142747 ||||| || ||| |||| || || ||||| ||||| | ||||| ||| | | || Sbjct 5354 CGCACGGATGCGACCGGCGTTAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAAT 5295 Query 142748 TGAGTTAGCAGTTTTGTTAATAGATTTCAGCGAGTCGCCGGCTTCAATAACCACACAAGA 142807 | | | | || |||||| || | || ||||||| ||||| | || || || Sbjct 5294 CGCGCTGGAGGTGGCGTTAATGGAATCAAGGCTGTCGCCGCACTCAATCAGTACGCAGGA 5235 Query 142808 ACTAAATTGACGGGTTGGTGTACGTGCTCCAGCCATAATAGGAGTAGGCAATGAAACCT 142866 || || || || || || || || | || | |||||| || || |||| |||| || Sbjct 5234 GCTGAACTGGCGCGTCGGGGTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAATCT 5176 >seq93888 Length=1140 Score = 104 bits (114), Expect = 3e-17 Identities = 184/264 (70%), Gaps = 6/264 (2%) Strand=Plus/Minus Query 143773 TTGTTCAACATGGTTAGAATAGATGTGCGTATTGCCGCCTGAGAACACTAAATCGCCTGG 143832 |||||| | || |||||||||| |||||||| ||| |||| | || |||||||| | Sbjct 284 TTGTTCTAAGTGATTAGAATAGAGGTGCGTATCGCCCCCTGTCCAAACAAAATCGCC--G 227 Query 143833 AATA--AGATTACACATCTTAGCTACAATATGCACAAG-AGCGGCGTAAGAGGCGATATT 143889 | | |||| |||| || ||| || ||||| || || |||| | || ||||||||| Sbjct 226 ACTTCGAGATCACACTGCTGAGCGACCATATGGACCAGTAGCG-CATAGCTGGCGATATT 168 Query 143890 AAATGGCAATCCTAAGAACACGTCAACAGAACGTTGGTACCACTGGAGGTCAAGATGACC 143949 ||| || || ||||| || || ||| ||| || || || |||| || | || Sbjct 167 AAAGGGTAAGCCTAAAAAGACATCACAAGAGCGCTGATAGAGCTGGCAACTGAGTTTGCC 108 Query 143950 ATTACGGACGTTGAACTGGTAAAAACAGTGGCACGGTGGAAGAGCCATCTTATTAATTTC 144009 ||| ||||| ||| ||| |||| ||||| |||| || ||||| |||| | || Sbjct 107 ATTCACGACGTAGAATTGGAAAAAGGCATGGCAAGGTGCCAGCGCCATTTTATCTAACTC 48 Query 144010 TGCCGGGTTCCATGCTGATACGAT 144033 | | |||||||| |||||||| Sbjct 47 TCCAACATTCCATGCCGATACGAT 24 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537072282581240