Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq79 104 5e-17 seq3 104 5e-17 seq43 102 2e-16 seq19 102 2e-16 seq59 100 6e-16 seq131 98.7 2e-15 seq102 98.7 2e-15 seq78 98.7 2e-15 seq63 98.7 2e-15 seq41 98.7 2e-15 seq38 98.7 2e-15 seq9 98.7 2e-15 seq5 98.7 2e-15 seq2 98.7 2e-15 >seq79 Length=1067010 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 143556 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 143615 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 143616 CCCACGGTGGGC 143627 >seq3 Length=5632934 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 1774999 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1775058 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1775059 CCCACGGTGGGC 1775070 >seq43 Length=1752904 Score = 102 bits (112), Expect = 2e-16 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 |||||||||||||||||| |||||||||| || || |||| || |||||||||||||||| Sbjct 437012 TTGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 436953 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 436952 GCCCCACGGTGGGC 436939 >seq19 Length=2344052 Score = 102 bits (112), Expect = 2e-16 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 |||||||||||||||||| |||||||||| || || |||| || |||||||||||||||| Sbjct 401378 TTGCCCGTCTAGCTCAGTAGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 401319 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 401318 GCCCCACGGTGGGC 401305 >seq59 Length=1347071 Score = 100 bits (110), Expect = 6e-16 Identities = 316/478 (66%), Gaps = 20/478 (4%) Strand=Plus/Minus Query 230170 TCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGT 230229 || || || || ||||||||||| | | || || ||||| || | || ||||| Sbjct 1071115 TCTTTCGCGGATCGTCTCGTCGCTTTTGCTTGCGTGGAAGGCATCTTCTTCTCCGGCTCG 1071056 Query 230230 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTG---ATGCCTGGCCTCGGTCTGTCT 230286 |||||||| |||||||||||| || ||| | | | ||||| |||||| | || Sbjct 1071055 TTCTGCGCGATCTTTTGGCTG---AAAAAACGCGGGCTTATGCCCGGCCTCACATTTTCC 1070999 Query 230287 AACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTAT-GTATTC 230345 || || | || ||||||||| || || || | |||| | | |||| ||| Sbjct 1070998 AATGAACTAATTTCTCGCGACGAAGGACTTCACTGTGATTTCG-CTTGTTTATTGTACAG 1070940 Query 230346 AAAGCTCCAGAACAAGCT-ACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTG 230404 ||| |||||||||| ||| | ||| | | | | || | | || ||||| | Sbjct 1070939 TTTGCTGAAGAACAAGCTTACCGAAGAACACGTTAGATCGA-TCGTATCCGACGCAGTGG 1070881 Query 230405 AAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATT-GGCATGAACGCT 230463 | | ||| || ||||| || | || | || ||| || || | || |||||| | Sbjct 1070880 ATATCGAGCGAGAATTCATCTGCAATGCACTCCCGTGT-GCGTTGGTCGGAATGAACAGT 1070822 Query 230464 GAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTAC 230523 || || ||| | ||||| |||||||||||||| || || | | ||||| || || || Sbjct 1070821 GATCTGATGAGTCAGTATATCGAATTCGTAGCTGATCGATTGATCGTTGCTCTCGGATAT 1070762 Query 230524 GAGAAAGTGTACAA---CTCTAAGAACCCCTTTGCATT-TATGGAGCTCATTTCGCTTCA 230579 ||| | || || | |||| ||||| ||| |||||| | |||||| | || Sbjct 1070761 AGCAAAATTTATAACGTCGCTAA----TCCTTTCGATTGGATGGAGTTGATTTCGTTGCA 1070706 Query 230580 AGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 |||||||| || |||||||| ||| | || | ||||| |||| | || ||||||| Sbjct 1070705 GGGGAAGACAAATTTCTTCGAGAAGAGAGTAGGAGACTACCAGAAGGCTTCTGTGATG 1070648 >seq131 Length=538547 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 355445 GCCCGTCTAGCTCAGTAGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 355504 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 355505 CCCACGGTGGGC 355516 >seq102 Length=809410 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 600832 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 600891 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 600892 CCCACGGTGGGC 600903 >seq78 Length=1057147 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 47889 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 47830 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 47829 CCCACGGTGGGC 47818 >seq63 Length=1285062 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 765325 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 765384 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 765385 CCCACGGTGGGC 765396 >seq41 Length=1768129 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 662848 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 662907 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 662908 CCCACGGTGGGC 662919 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 1652115 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1652174 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1652175 CCCACGGTGGGC 1652186 >seq38 Length=1794542 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 938470 GCCCGTCTAGCTCAGTAGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 938411 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 938410 CCCACGGTGGGC 938399 >seq9 Length=4860633 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 1679856 GCCCGTCTAGCTCAGTAGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1679915 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1679916 CCCACGGTGGGC 1679927 >seq5 Length=4049515 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 85653 GCCCGTCTAGCTCAGTAGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 85594 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 85593 CCCACGGTGGGC 85582 >seq2 Length=5918456 Score = 98.7 bits (108), Expect = 2e-15 Identities = 314/474 (66%), Gaps = 15/474 (3%) Strand=Plus/Plus Query 230170 TCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGT 230229 || || || || ||||||||||| | | || || ||||| || | || ||||| Sbjct 905250 TCTTTCGCGGATCGTCTCGTCGCTTTTGCTTGCGTGGAAGGCATCTTCTTCTCCGGCTCG 905309 Query 230230 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTG---ATGCCTGGCCTCGGTCTGTCT 230286 |||||||| |||||||||||| || ||| | | | ||||| |||||| | || Sbjct 905310 TTCTGCGCGATCTTTTGGCTG---AAAAAACGCGGGCTTATGCCCGGCCTCACATT-TCC 905365 Query 230287 AACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTAT-GTATTC 230345 || || | || ||||||||||| || || | |||| | | |||| ||| Sbjct 905366 AATGAACTAATTTCTCGCGACGAGGA-CTTCACTGTGATTTCG-CTTGTTTATTGTACAG 905423 Query 230346 AAAGCTCCAGAACAAGCT-ACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTG 230404 ||| |||||||||| ||| | ||| | | | | || | | || ||||| | Sbjct 905424 TTTGCTGAAGAACAAGCTTACCGAAGAACACGTTAGATCGA-TCGTATCCGACGCAGTGG 905482 Query 230405 AAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATT-GGCATGAACGCT 230463 | | ||| || ||||| || | || | ||| ||| || || | || |||||| | Sbjct 905483 ATATCGAGCGAGAATTCATCTGCAATGC-ACTCCGTGT-GCGTTGGTCGGAATGAACAGT 905540 Query 230464 GAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTAC 230523 || || ||| | ||||| |||||||||||||| || || | | ||||| || || || Sbjct 905541 GATCTGATGAGTCAGTATATCGAATTCGTAGCTGATCGATTGATCGTTGCTCTCGGATAT 905600 Query 230524 GAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGG 230583 ||| | || ||| || || |||| | |||||| | |||||| | || ||| Sbjct 905601 AGCAAAATTTATAACGTCGCTAATCCGTTTGATTGGATGGAGTTGATTTCGTTGCAGGGG 905660 Query 230584 AAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 ||||| || |||||||| ||| | || | ||||| |||| | || ||||||| Sbjct 905661 AAGACAAATTTCTTCGAGAAGAGAGTAGGAGACTACCAGAAGGCTTCTGTGATG 905714 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 5509737 GCCCGTCTAGCTCAGTAGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 5509796 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 5509797 CCCACGGTGGGC 5509808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057811856180480