Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq27 134 1e-26 >seq27 Length=2003651 Score = 134 bits (148), Expect = 1e-26 Identities = 420/638 (66%), Gaps = 18/638 (3%) Strand=Plus/Plus Query 16676 TGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCC 16735 ||||| || | || | || ||||| || ||||| || |||| || || || |||| Sbjct 1228368 TGGTACTCACCTACTCTCTTCTCGAAGAAATTAGTCTTACCCTGCAGCGAGATTAACTCC 1228427 Query 16736 ATGAAATCAAAAGGATTAGTAGC--TGAAAATATTTTAGAGTACCCCAGTTCGGCGATTA 16793 || |||| || ||||| | | || |||| || | || ||| || || ||| | Sbjct 1228428 ATCCAATCGAACGGATTCACAACATTGTAAATTTTGT-GATGACCG-AGAGCGCCGAGCA 1228485 Query 16794 ATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGAC 16853 ||| ||| || || ||||| ||||| |||| |||||| |||| ||||||||| | | || Sbjct 1228486 ATCGATCAGCAACGAATTCGATATACTGGCTCATTAAATCGCTGTTCATTCCGACCA-AC 1228544 Query 16854 GTACC-GGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATA 16912 | | || || || | | ||| |||||||| | || || || | | || Sbjct 1228545 GCGCATGGGAGCGCGTTGCAGATGAATTCCCGCTCTATATCCACTGCGTCGATTACGAT- 1228603 Query 16913 CTAGC-AACTCGTTCCTCGGACGGTGTATGTTTAAGA----TGTTTAAACATCAGACATG 16967 | | | |||| |||| ||||| | | || || ||| ||| ||| | ||| | Sbjct 1228604 CGATCGAACTTGTTCTTCGGAAAGCTTGTGATTTAGAAAACTGTATAATAA----ACAAG 1228659 Query 16968 CGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGG 17027 |||||||||| || | ||| ||||| | || |||||||| |||||||| | |||| Sbjct 1228660 CGAAATCGCAGTGAAGTCCTTCGTCGCGAGAAATTAGTTCGTTTGAAAATGTGAGGCCGG 1228719 Query 17028 GCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATAC 17087 |||| || ||||| || | ||| || ||||| |||||| || || ||||| || | Sbjct 1228720 GCATAAGACCACGTTTTTTCAGCCAGAAGATCGCACAGAACGAGCCGGAGAAGAAGATGC 1228779 Query 17088 CCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTC-TTTGTTACGAATC 17146 | || ||| | |||||||||| | ||||| ||| | | || || | || | | |||| Sbjct 1228780 CTTCTACGCAAGCAAACGCGACGAGGCGTTCTGCGAATGAAGCTTCGTCTGATTC-AATC 1228838 Query 17147 CATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAAT 17206 || | || |||||| ||||| | | || | || || || || || Sbjct 1228839 CACCGCAGCGCCCACTGAGCTTTCCGGGCAACACATGGGACTGTATCGATCGCGCGGAAG 1228898 Query 17207 AATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCG 17266 | | || || | ||| | ||||| || || | || |||||||||||||| Sbjct 1228899 AGACGCGACTTCTCGTCGGAGTCTTTGATATATGTTTCCAATAGAAGGCTGTACATTTCT 1228958 Query 17267 GAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAA 17304 |||||||||||||| || || ||||| || || || || Sbjct 1228959 GAGTGTATGTTCTCGATTGCGATCTGGAAGCCATAGAA 1228996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517539803489280