Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq59 95.1 1e-14 seq27 89.7 5e-13 >seq59 Length=1347071 Score = 95.1 bits (104), Expect = 1e-14 Identities = 245/369 (66%), Gaps = 6/369 (2%) Strand=Plus/Plus Query 16194 ACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAA 16253 ||| || ||| ||||| || || || ||||||||||| | || ||||| ||||||| Sbjct 1070944 ACAATAAACAAGCGAAATCACAGTGAAGTCCTTCGTCGCGAGAAATTAGTTCATTGGAAA 1071003 Query 16254 AAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCC 16312 | || | || ||||| || ||||| || | ||| || ||||| ||| || || || Sbjct 1071004 ATGTGAGGCCGGGCATAAGCCCGCGTTTTTTCAGCCAAAAGATCGC-GCAGAACGAGCCG 1071062 Query 16313 GAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCAT-- 16370 || ||||| || || || || | |||||||||| | || |||||| | | || || Sbjct 1071063 GAGAAGAAGATGCCTTCCACGCAAGCAAAAGCGACGAGACGATCCGCGAAAGAAGAATCA 1071122 Query 16371 CTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTT 16430 | ||| |||||| | | |||| | |||||| | | ||| | || | Sbjct 1071123 CACGATT--CAATCCACTCGAGCGCCCACTTGGCTTTACGGGCGACACACGGGACAGTGT 1071180 Query 16431 CTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTA 16490 | || || || | | || || | || | ||||| || || | || | Sbjct 1071181 CGATCGCGCGGAAGAGACGTGCCTTCTCGTCGGAGTCTTTGATATAAGTTTCTAATAGAA 1071240 Query 16491 AACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAG 16550 ||||||||||||||||||||||||||| ||||| ||||| || || ||||| | | Sbjct 1071241 GACTGTACATTTCTGAGTGTATGTTCTCAATGGCGATCTGGAAACCGTAGAATGCCCTCG 1071300 Query 16551 CCTCCGCTA 16559 ||||||||| Sbjct 1071301 CCTCCGCTA 1071309 >seq27 Length=2003651 Score = 89.7 bits (98), Expect = 5e-13 Identities = 229/346 (66%), Gaps = 2/346 (1%) Strand=Plus/Plus Query 16198 TAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGT 16257 || ||| ||||| ||||| || ||||||||||| | || |||||||| ||||| || Sbjct 1228652 TAAACAAGCGAAATCGCAGTGAAGTCCTTCGTCGCGAGAAATTAGTTCGTTTGAAAATGT 1228711 Query 16258 TAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAA 16317 | || ||||| || ||||| || | |||||| |||||| || || || || || Sbjct 1228712 GAGGCCGGGCATAAGACCACGTTTTTTCAGCCAGAAGATCGCACAGAACGAGCCGGAGAA 1228771 Query 16318 GAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATC-TTTAT 16376 ||| || || || || | ||||| |||| | ||||| ||| | | ||| || | | Sbjct 1228772 GAAGATGCCTTCTACGCAAGCAAACGCGACGAGGCGTTCTGCGAATGAAGCTTCGTCTGA 1228831 Query 16377 TACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGG 16436 | | |||||| | | |||| | ||||| | | ||| | || || || | Sbjct 1228832 TTC-AATCCACCGCAGCGCCCACTGAGCTTTCCGGGCAACACATGGGACTGTATCGATCG 1228890 Query 16437 CCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGT 16496 | || | | || || | || | ||||| || || | || | |||| Sbjct 1228891 CGCGGAAGAGACGCGACTTCTCGTCGGAGTCTTTGATATATGTTTCCAATAGAAGGCTGT 1228950 Query 16497 ACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAA 16542 |||||||||||||||||||||| || || ||||| || |||||||| Sbjct 1228951 ACATTTCTGAGTGTATGTTCTCGATTGCGATCTGGAAGCCATAGAA 1228996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511408672158720