Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq27 114 2e-20 seq9 109 7e-19 >seq27 Length=2003651 Score = 114 bits (126), Expect = 2e-20 Identities = 239/348 (69%), Gaps = 11/348 (3%) Strand=Plus/Plus Query 24132 AAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTG 24191 ||||| |||||||||||||| || || ||||| | | ||||| |||||| ||||| ||| Sbjct 1228653 AAACAAGCGAAATCGCAGTGAAGTCCTTCGTCGCGAGAAATTAGTTCGTTTGAAAATGTG 1228712 Query 24192 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAA 24250 || |||||||| || ||||| ||||| ||||| || || | | || || || || || || Sbjct 1228713 AGGCCGGGCATAAGACCACGTTTTTTCAGCCAGAAGATCG-CACAGAACGAGCCGGAGAA 1228771 Query 24251 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCC--AT-AACCGGCG-CTG- 24305 ||| || |||||||| ||||| || | || | |||| | || || | || ||| Sbjct 1228772 GAAGATGCCTTCTACGCAAGCAAACGCGACGAGGCGTTCTGCGAATGAAGCTTCGTCTGA 1228831 Query 24306 -TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTAT 24364 ||| |||||| | ||||| | || ||| ||||| || | ||| || || Sbjct 1228832 TTCA---ATCCACCGCAGCGCCCACTGAGCTTTCCGGGCAACACATGGGACTGTATCGAT 1228888 Query 24365 AGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACT 24424 || |||||| || || | ||||| | |||||| || | | ||| || Sbjct 1228889 CGCGCGGAAGAGACGCGACTTCTCGTCGGAGTCTTTGATATATGTTTCCAATAGAAGGCT 1228948 Query 24425 ATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 24472 |||||||| || || ||||| || || || || || || || ||||| Sbjct 1228949 GTACATTTCTGAGTGTATGTTCTCGATTGCGATCTGGAAGCCATAGAA 1228996 >seq9 Length=4860633 Score = 109 bits (120), Expect = 7e-19 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 |||||| ||||| | ||||| || |||| ||| | || | |||||| || | ||| || Sbjct 1349671 TCCTCCTTGATCAACGTATCGGGCAGTGTCGTTAAACACCCGCAACATCGGCACAATCCC 1349730 Query 54244 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 54303 ||| || | ||||| || || |||||||| ||| | |||||||||||| || || Sbjct 1349731 ATTTGAAGTTCCATTTGTACCACGAATATAGCTACCAGTTGCACGAATATTATGAACAGA 1349790 Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363 | ||| || ||||| || |||| || | || ||| ||||| |||||||| || Sbjct 1349791 AACACCAATTCCCCCAGCAGATTTACTTATAACAGCACATTCCTTTAAAGTATCATAAAT 1349850 Query 54364 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 54406 || || ||||| || || ||||| || || ||||||||| Sbjct 1349851 TCCTTCAATACTGTCTTCTTTCATGCAAATCAGGAAACAGCTA 1349893 Score = 109 bits (120), Expect = 7e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 54424 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 54483 ||| || ||||| || |||||||| ||||| || |||||||| | ||| | | || Sbjct 1349991 AGTGCCAGCATTGAACAAGGTAGGCGAAGCATGAGTAAACCAGCGCTGAGACATCAAATG 1350050 Query 54484 GTACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 54542 ||| || | || | || || ||||| | ||| |||| ||| || || || ||||||| Sbjct 1350051 GTATGTTTTAATGACCGACTCAATATCATCCTTG-TGAACTCCCACAGCTACTCGCATTA 1350109 Query 54543 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCA 54602 ||||||||| ||||||||||| | |||| | |||| | || || | |||| Sbjct 1350110 GCATGTGCTGCGGTCTTTCAACCACCTTGCCAGACACCTTCAAGAGATACGACCTCTCCA 1350169 Query 54603 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 |||| ||||||||||| |||| || |||||| || ||||| || || Sbjct 1350170 AAGTCTTAAAACCAAAGTAGTCATAATCAAAGTCGCGGTCGTATATTAT 1350218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593714950318080