Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq81 95.1 2e-14 seq10 95.1 2e-14 seq34 84.2 3e-11 >seq81 Length=1043490 Score = 95.1 bits (104), Expect = 2e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 || || || ||||||||||| || ||||| || |||| || ||||| || || ||||| Sbjct 708210 CAGGACAAGGAAGGTATACCTCCCGATCAGCAGCGGCTAATCTTTGCCGGGAAGCAATTG 708269 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 |||||| | ||||| | | |||||||||||||| ||||| ||||| | || ||||| Sbjct 708270 GAGGATGGACGAACCCTTGCTGATTATAATATTCAGAAAGAGTCAACACTTCACCTGGTT 708329 Query 124749 TT 124750 || Sbjct 708330 TT 708331 >seq10 Length=3646474 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 || || || ||||||||||| || ||||| ||||| || || ||||| ||||| || || Sbjct 674664 CAGGACAAGGAAGGTATACCTCCAGATCAGCAAAGACTGATCTTTGCTGGAAAGCAGTTG 674605 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 || ||| | ||||| | | ||||||||||||||||| || ||||| | || | || Sbjct 674604 GAAGATGGACGAACCCTTGCTGATTATAATATTCAAAAGGAGTCAACACTTCACCTTGTC 674545 Query 124749 TTACGTTTACGAGGTGG 124765 ||| | || ||||||| Sbjct 674544 TTAAGACTAAGAGGTGG 674528 >seq34 Length=3699824 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||||||| ||||||| || || || || || || || | ||| | || ||| Sbjct 904814 ATGCAAATATTTGTAAAGACCCTTACCGGAAAGACCATCACCCTGGAGGTGGAGAGC-TC 904756 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || |||| | || ||||||||| || |||||||| || || || ||||| Sbjct 904755 GGACACGATCGATAATGTGAAGGCGAAAATTCAGGACAAAGAAGGCATCCCTCCGGATCA 904696 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| || ||||| || || || | ||||| | || || | | || || || Sbjct 904695 GCAGAGGCTGATATTTGCTGGGAAGCAGCTGGAGGACGGCCGCACCCTTGCCGACTACAA 904636 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 ||||| || || ||| | ||| |||| | ||| | || ||||| Sbjct 904635 CATTCAGAAGGAGAGTACTCTCCATCTGGTGCTTCGTCTGCGTGGTGG 904588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755447538892800