Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq34 120 2e-22 seq300 118 8e-22 seq53 118 8e-22 seq2 109 4e-19 seq143 89.7 4e-13 >seq34 Length=3699824 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| || || || |||||||||||||||||||||||| || ||| |||| ||| Sbjct 904606 ACCAGATGGAGAGTACTCTCCTTCTGAATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCC 904665 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || ||||||| || ||| || || ||||| | || || |||||| | Sbjct 904666 AGCTGCTTCCCAGCAAATATCAGCCTCTGCTGATCCGGAGGGATGCCTTCTTTGTCCTGA 904725 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||| || | | ||||| | ||||||||||| ||| || ||||| Sbjct 904726 ATTTTCGCCTTCACATTATCGATCGTGTCCGAGCTCTCCACCTCCAGGGTGATGGTCTTT 904785 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||| ||||| |||||||| Sbjct 904786 CCGGTAAGGGTCTTTACAAATATTTGCAT 904814 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || |||||||||||||| || ||||||||| || || |||| ||| Sbjct 904834 ACCAGGTGGAGAGTGCTCTCCTTCTGGATATTGTAGTCGGCAAGGGTACGGCCGTCTTCC 904893 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | ||| || || || || |||| || ||| ||||| || || | ||| ||||||||| | Sbjct 904894 AATTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCCGGGGGAATACCTTCCTTGTCCTGA 904953 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||| || | | | ||| || ||| || || | || ||||||||| Sbjct 904954 ATTTTGGCCTTCACGTTATCGATAGTATCCGAACTCTCAACTTCAAGAGTGATCGTCTTG 905013 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || |||||||| ||||| ||||| Sbjct 905014 CCAGTAAGGGTCTTCACGAAGATCTGCAT 905042 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||| || || |||||||||||||| || ||||||||| || || |||| Sbjct 905059 AACACCAGATGGAGAGTGCTCTCCTTCTGGATATTGTAGTCGGCAAGGGTACGGCCGTCT 905118 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||| || || || || || |||| || ||| ||||| || || | ||| ||||||||| Sbjct 905119 TCCAACTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCC 905178 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||| ||| ||| || | | | |||| | ||| || |||| ||| || ||| Sbjct 905179 TGAATCTTTGCCTTCACATTGTCAATGGTGTCAGAGCTCTCGACTTCCAAGGTGATGGTC 905238 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || ||||||||||| ||||| |||||| Sbjct 905239 TTCCCAGTGAGAGTCTTCACGAAGATCTGCATG 905271 >seq300 Length=293291 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 ||| || ||||| |||| || | ||| || ||| ||||||||| |||||||||||| Sbjct 11171 GCCTCCCCTCAACCTTAGCACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 11230 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| | || || || ||||| ||||| || |||| || ||| ||||| ||||| Sbjct 11231 AAGGGTGCGGCCATCCTCAAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGG 11290 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||||| ||| || ||| ||| || | | | | ||| ||| || Sbjct 11291 AATGCCCTCCTTATCCTGGATCTTTGCCTTTACATTGTCGATGGTATCCGAGGACTCGAC 11350 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| | ||| ||||||||||| || || |||||||| ||||| ||||| Sbjct 11351 CTCGAGGGTGATCGTCTTGCCTGTGAGGGTCTTCACGAAGATCTGCAT 11398 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || || ||||| || || || | ||| || ||| ||||||||| || ||||||||| Sbjct 11400 CCTCCCCTCAACCTCAAAACAAGGTGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGCA 11459 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || || || || || || ||||| ||||| | ||| ||||| || || Sbjct 11460 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCTCTGCTGGTCCGGGGGG 11519 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||||||||| || ||| |||||| | | | ||||| ||| ||| Sbjct 11520 ATTCCCTCCTTGTCCTGGATCTTTGCCTTAACGTTGTCAATGGTGTCCGAGGACTCGACC 11579 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||| |||||||| || || || ||||| || ||||| ||||| Sbjct 11580 TCAAGGGTGATCGTCTTTCCTGTGAGGGTCTTAACGAAGATCTGCAT 11626 >seq53 Length=1478458 Score = 118 bits (130), Expect = 8e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || |||||||||||||||||||| || || || ||| | || ||| Sbjct 997869 ACCAAATGGAGAGTGCTCTCCTTCTGAATGTTATAATCAGCTAGAGTGCGGCCATCTTCC 997810 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| ||||| || || || | || ||| ||||| || || | ||| ||||| ||| | Sbjct 997809 AGTTGCTTTCCAGCAAAAATTAGCCTCTGCTGGTCCGGGGGAATACCTTCCTTATCCTGA 997750 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||| || | | | ||| || ||||||||| | || || |||||| Sbjct 997749 ATTTTGGCCTTGACATTATCAATTGTATCCGAACTCTCCACCTCAAGAGTGATTGTCTTG 997690 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || |||||||||||||| |||||| Sbjct 997689 CCAGTAAGCGTCTTCACAAAGATCTGCATG 997660 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| || || |||||||||||||| ||||||||||| || ||| |||| ||| Sbjct 998097 ACCAGATGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCCGCGAGGGTGCGGCCGTCCTCC 998038 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || || | || ||| ||||||||||| | || ||||||||| | Sbjct 998037 AGCTGCTTCCCCGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATCCCTTCCTTGTCCTGA 997978 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||||| | | | || | ||||||||| | ||| || ||||| Sbjct 997977 ATTTTAGCTTTAACATTATCGATCGTATCAGAGCTCTCCACCTCAAGGGTGATGGTCTTT 997918 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||||||||| || ||||| Sbjct 997917 CCGGTAAGGGTCTTCACAAAAATCTGCAT 997889 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| | ||| | | |||||||||| ||| ||||||||| ||||| || || Sbjct 997660 GCCACCACGCAACCGAAGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTATAATCAGC 997601 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || || |||| |||| || || || || ||||||| || ||| ||||| || || Sbjct 997600 AAGGGTACGGCCGTCCTCCAACTGCTTACCAGCAAATATCAGCCTCTGCTGGTCAGGGGG 997541 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | ||| ||||||||| ||| || ||| || | | |||| | ||| || Sbjct 997540 AATACCTTCCTTGTCCTGAATCTTGGCCTTCACGTTGTCGATCGTGTCGGAGCTCTCGAC 997481 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||| || ||||| || || ||||||||||| ||||| ||||| Sbjct 997480 TTCCAAGGTTATTGTCTTTCCGGTGAGAGTCTTCACGAAGATCTGCAT 997433 >seq2 Length=5918456 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || |||||||||||||||||||||||||| || | |||| || Sbjct 561441 ACCAGGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCAGCGAGGGTCCTCCCGTCCTCG 561382 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| |||| || ||| ||||| ||||| | ||||||||||||| | Sbjct 561381 AGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGA 561322 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | |||| | ||| ||||| | |||||| ||||| Sbjct 561321 ATCTTCGCCTTCACGTTATCGATAGTGTCGGAAGACTCGACCTCGAGGGTAATAGTCTTC 561262 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || ||||| || || || |||||| Sbjct 561261 CCGGTGAGGGTCTTGACGAAAATCTGCATG 561232 Score = 102 bits (112), Expect = 6e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || |||||||||||||| |||||||| ||| ||| | |||| || Sbjct 561213 ACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCGGCGAGTGTTCTCCCGTCCTCG 561154 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| |||| || ||| || || || || | ||||||||||| | Sbjct 561153 AGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGA 561094 Query 45248 ATTTTTTGCTTAACCGCCG-CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 | | || |||| || | | | | ||||| || ||||| | ||| || ||||| Sbjct 561093 A-TCTTGGCTTTTACGTTGTCGATGGTGTCCGAGGATTCAACCTCAAGGGTGATGGTCTT 561035 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| || || ||||| |||||||| ||||| Sbjct 561034 GCCAGTGAGGGTCTTGACAAAGATCTGCAT 561005 >seq143 Length=574977 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| |||||||| || || | ||| |||||| |||||||| ||||| || || Sbjct 166267 CCACCCCTCAATCTCAAAACGAGGTGAAGCGTGGATTCCTTCTGGATGTTATAATCAGCG 166326 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || || ||||| || || || || || | || ||| || || || || Sbjct 166327 AGCGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATGAGCCTCTGCTGATCTGGGGGA 166386 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||||||||||| || || ||| || | | | ||||| ||| ||| Sbjct 166387 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGGACTCGACC 166446 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||| || |||||||| || |||||||| || ||||| ||||| Sbjct 166447 TCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 166493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395070885778816