Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2 125 6e-24 seq59 113 4e-20 seq251 107 2e-18 seq143 107 2e-18 seq34 96.9 3e-15 seq53 95.1 1e-14 seq9 89.7 5e-13 >seq2 Length=5918456 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| || || || || || |||||| |||| ||||| | ||| Sbjct 561689 ATGCAAATTTTCGTCAAGACCCTCACCGGGAAGACTATCACCCTCGAGGTTGAGTCTTCC 561748 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || || ||||||||| ||| | || || || ||| Sbjct 561749 GACACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAG 561808 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || || || ||||| ||||||||||| | ||| || ||| |||||| Sbjct 561809 CAGCGGTTGATTTTTGCAGGCAAGCAGTTGGAAGATGGCAGAACTCTGGCCGACTATAAC 561868 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || ||||| ||||| || || || ||||| || Sbjct 561869 ATCCAAAAGGAATCAACCCTCCACCTGGTGCT 561900 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| |||||||| ||||| || || || || || || ||| |||| || || | || Sbjct 561460 CATGCAGATTTTCGTCAAGACCCTCACTGGGAAGACTATTACCCTCGAGGTCGAGTCTTC 561519 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | |||| | || || || || ||||||||||||| | || || || || Sbjct 561520 CGACACTATCGATAACGTGAAGGCGAAGATCCAGGACAAGGAAGGCATCCCCCCGGATCA 561579 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| | || || || ||||| ||||||||||| | ||| || || || || Sbjct 561580 GCAGCGGTTGATTTTTGCAGGCAAGCAGTTGGAAGATGGCAGAACTCTGGCTGACTACAA 561639 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || ||||| || || || ||||| || Sbjct 561640 CATCCAGAAGGAATCCACCCTCCACCTGGTGCT 561672 Score = 100 bits (110), Expect = 3e-16 Identities = 252/371 (68%), Gaps = 14/371 (4%) Strand=Plus/Plus Query 57769 CGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGT 57828 |||||||||| || ||||| || || | |||||||| ||| | || |||||||||| Sbjct 905059 CGGAGGCGAGGGCATTCTACGGTTTCCAGATCGCCATTGAGAACATACACTCAGAAATGT 905118 Query 57829 ATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAA---ACGTAGACTGTTCA 57885 | || || | || || || | || || ||||||||| |||| || ||| Sbjct 905119 ACAGTCTTCTATTAGAAACTTATATCAAAGATTCCGACGAGAAGGCACGT---CTCTTCC 905175 Query 57886 ACGCGATCGAAACAATGCCCGCGA-TCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATA 57944 ||||||||| || | |||| | ||||| || || ||||| | || | ||||| Sbjct 905176 GCGCGATCGACACTGT-CCCGTGTGTCGCCCGTAAAGCCAAGTGGGCGCTCGAGTGGATT 905234 Query 57945 AAAA-GCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTAT 58003 || | | | | | ||||| || | || |||| || || ||| ||||| || Sbjct 905235 GAATCGTGTGATT-CTTCTTTCGCGGATCGTCTCGTCGCTTTTGCTTGCGTGGAAGGCAT 905293 Query 58004 ATTCTTTTCGGGCAGCTT-TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCG 58062 ||||| || ||| || |||| | || |||||| |||| |||||||| || ||||||| Sbjct 905294 CTTCTTCTCCGGCTCGTTCTGCG-CGATCTTTTGGCTGAAAAAACGCGGGCTTATGCCCG 905352 Query 58063 GCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGT 58122 |||| || ||| ||| || | || || |||||||| || || || |||||| || | Sbjct 905353 GCCTCACATTT-CCAATGAACTAATTTCTCGCGACGA-GGACTTCACTGTGATTTCGCTT 905410 Query 58123 GCCTAATGTAC 58133 | || ||||| Sbjct 905411 GTTTATTGTAC 905421 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| |||||||| ||||| || || || || || || ||| |||| || || | || Sbjct 561232 CATGCAGATTTTCGTCAAGACCCTCACCGGGAAGACTATTACCCTCGAGGTCGAGTCTTC 561291 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | |||| | || || || || ||||||||| || | || || ||||| Sbjct 561292 CGACACTATCGATAACGTGAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCGGACCA 561351 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || ||||||||||| ||| | || ||| | ||| | || || || Sbjct 561352 GCAGAGGCTGATTTTCGCTGGCAAGCAGCTCGAGGACGGGAGGACCCTCGCTGACTACAA 561411 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||| || || || || || ||||| || Sbjct 561412 CATTCAGAAGGAGAGCACCCTCCACCTGGTGCT 561444 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| || || ||||| || || || | || |||||| ||||| Sbjct 561917 ATGCAAATTTTTGTGAAGACCCTCACCGGCAAGACCATTACTCTAGAGGTTGAATCGTCC 561976 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || || || ||| ||| ||||| || | || || |||||| Sbjct 561977 GATACGATCGACAATGTGAAGGCGAAGATACAGGATAAGGAGGGTATCCCCCCGGACCAG 562036 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGC-GATTATA 31370 ||| | || ||||| ||||| || ||| | || || | | | ||| | ||| || || | Sbjct 562037 CAGAGGCTTATATTTGCTGGGAAGCAGCTCGAGGA-TGGACGTACTCT-AGCAGACTACA 562094 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 | || || || ||||| || || || ||||| || Sbjct 562095 ATATCCAGAAGGAATCCACCCTCCACCTGGTGCT 562128 >seq59 Length=1347071 Score = 113 bits (124), Expect = 4e-20 Identities = 253/371 (68%), Gaps = 12/371 (3%) Strand=Plus/Minus Query 57769 CGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGT 57828 |||||||||| || ||||| || || | |||||||| ||| | || |||||||||| Sbjct 1071306 CGGAGGCGAGGGCATTCTACGGTTTCCAGATCGCCATTGAGAACATACACTCAGAAATGT 1071247 Query 57829 ATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAA---ACGTAGACTGTTCA 57885 | || || | || || || | || ||| ||||||||| |||| || ||| Sbjct 1071246 ACAGTCTTCTATTAGAAACTTATATCAAAGACTCCGACGAGAAGGCACGT---CTCTTCC 1071190 Query 57886 ACGCGATCGAAACAATGCCCGCGA-TCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATA 57944 ||||||||| || | |||| | ||||| || || ||||| | || | ||||| Sbjct 1071189 GCGCGATCGACACTGT-CCCGTGTGTCGCCCGTAAAGCCAAGTGGGCGCTCGAGTGGATT 1071131 Query 57945 AAAA-GCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTAT 58003 || | | | | | ||||| || | || |||| || || ||| ||||| || Sbjct 1071130 GAATCGTGTGATT-CTTCTTTCGCGGATCGTCTCGTCGCTTTTGCTTGCGTGGAAGGCAT 1071072 Query 58004 ATTCTTTTCGGGCAGCTT-TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCG 58062 ||||| || ||| || |||| | || |||||| |||| |||||||| || ||||||| Sbjct 1071071 CTTCTTCTCCGGCTCGTTCTGCG-CGATCTTTTGGCTGAAAAAACGCGGGCTTATGCCCG 1071013 Query 58063 GCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGT 58122 |||| || ||| ||| || | || || |||||||| || || || |||||| || | Sbjct 1071012 GCCTCACATTTTCCAATGAACTAATTTCTCGCGACGAAGGACTTCACTGTGATTTCGCTT 1070953 Query 58123 GCCTAATGTAC 58133 | || ||||| Sbjct 1070952 GTTTATTGTAC 1070942 >seq251 Length=123057 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||||| || ||||| || |||||| | || || || | || Sbjct 99415 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTGGAGGTCGAGTCCTCG 99356 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | |||||| | || |||||||| ||| | || || |||||| Sbjct 99355 GATACCATCGACAACGTCAAAGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 99296 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || ||||||||||| ||| | || ||| || | ||||||||| Sbjct 99295 CAGAGGCTCATTTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCTGATTATAAC 99236 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || ||||| || ||||| || || | ||| ||||||| |||| Sbjct 99235 ATCCAGAAGGAATCCACGCTTCACCTCGTTTTGAGATTGAGGGGTGGTA 99187 >seq143 Length=574977 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||||| || ||||| || |||||| |||| || || | || Sbjct 166721 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCG 166662 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | |||||| | || |||||||| ||| | || || |||||| Sbjct 166661 GATACCATCGATAACGTCAAAGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 166602 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || |||||||| ||| | || ||| || | ||||||||| Sbjct 166601 CAGAGGCTCATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCTGATTATAAC 166542 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || ||||| || ||||| || || | ||| ||||||| |||| Sbjct 166541 ATCCAGAAGGAATCCACGCTTCACCTCGTTTTGAGATTGAGGGGTGGTA 166493 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||||| || ||||| || |||||| |||| || || | || Sbjct 166265 ATGCAGATCTTCGTCAAGACTCTAACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCG 166206 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | ||||| | || |||||||| ||| | || || || ||| Sbjct 166205 GATACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGATCAG 166146 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || ||||||||||| ||| | || ||| || | ||||||||| Sbjct 166145 CAGAGGCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCTGATTATAAC 166086 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || ||||| || ||||| || || | ||| ||||||| |||| Sbjct 166085 ATCCAGAAGGAATCCACGCTTCACCTCGTTTTGAGATTGAGGGGTGGTA 166037 >seq34 Length=3699824 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || ||||| || || || || ||||| |||| || ||| ||| Sbjct 905498 ATGCAGATCTTTGTCAAAACTCTAACCGGGAAGACCATCACTCTCGAGGTCGAAAGCTCC 905439 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || | ||| |||||||| || | || || |||||| Sbjct 905438 GACACGATCGACAATGTAAAGGCAAAAATCCAAGACAAGGAGGGAATTCCTCCGGACCAG 905379 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | || || |||||||| ||||||||||||||| | || | ||||| ||| Sbjct 905378 CAAAGGCTCATCTTCGCTGGGAAACAGTTGGAAGACGGTCGTACCCTTGCTGATTACAAC 905319 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || || || || || |||||||| ||||| || |||| Sbjct 905318 ATCCAGAAGGAGTCTACTCTTCACCTGGTGCTGCGACT 905281 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || ||||| |||||||| | || ||||| || Sbjct 905042 ATGCAGATCTTCGTGAAGACCCTTACTGGCAAGACGATCACTCTTGAAGTTGAGAGTTCG 904983 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| | || || | ||| |||||||||||| | || || |||||| Sbjct 904982 GATACTATCGATAACGTGAAGGCCAAAATTCAGGACAAGGAAGGTATTCCCCCGGACCAG 904923 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||| | || || || ||||| || || ||||||||| Sbjct 904922 CAGAGGCTGATTTTTGCTGGTAAGCAATTGGAAGAC 904887 >seq53 Length=1478458 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| || ||||||||||| || || |||||| |||| || || || Sbjct 997205 ATGCAAATCTTCGTGAAAACTCTGACAGGGAAGACCATCACCCTCGAGGTCGAGAGCTCT 997264 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | || ||| | || ||||||||| || | || || |||||| Sbjct 997265 GACACTATTGACAATGTAAAAGCTAAGATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 997324 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 || | || || ||||| || || ||| | || || | || | ||| ||||| || Sbjct 997325 CAAAGACTCATTTTCGCCGGGAAGCAGCTCGAGGATGGCAGAACCCT-AGCTGATTACAA 997383 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||| || || || || |||||||||||||| || |||| Sbjct 997384 CATCCAGAAGGAGTCTACTCTTCATCTGGTGCTACGACT 997422 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||||| || || || || || ||| | || || || ||| Sbjct 997433 ATGCAGATCTTCGTGAAGACTCTCACCGGAAAGACAATAACCTTGGAAGTCGAGAGCTCC 997492 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || | || |||||||||||| | || || |||||| Sbjct 997493 GACACGATCGACAACGTGAAGGCCAAGATTCAGGACAAGGAAGGTATTCCCCCTGACCAG 997552 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || ||||| ||||| || |||||||| ||| || | ||||||||| Sbjct 997553 CAGAGGCTGATATTTGCTGGTAAGCAGTTGGAGGACGGCCGTACCCTTGCTGATTATAAC 997612 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || || || || || ||| | || |||| ||| Sbjct 997613 ATCCAGAAGGAGTCCACTTTGCACTTGGTGCTT 997645 >seq9 Length=4860633 Score = 89.7 bits (98), Expect = 5e-13 Identities = 128/176 (73%), Gaps = 7/176 (4%) Strand=Plus/Plus Query 22492 GTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGA 22551 ||||||||| || || | ||||| || ||||||||||||| || |||||| || || Sbjct 1347165 GTAAATGTTCGAGGTATATGGTTCAAAGCATTCATTGTTTCCTAGAATCTGACTTGTTGA 1347224 Query 22552 AGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAAT-TTTAC 22610 ||| || ||||| || || | ||| || ||||| || | || | ||| ||||| || | Sbjct 1347225 AGCAGTAGGCATTGGAGCAACCAGAAGAGAGTTCCTTACTCCATTCTTAGAAATCATTTC 1347284 Query 22611 TCTTGAGCAT-CGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATC 22665 ||| | || | ||| ||||| ||||| || || ||||||| ||||||||| Sbjct 1347285 TCTCAA--ATCCTTCCAATCCCATAGATCTGATGGAATCACATT---CCACATATC 1347335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445761407416320