Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2 141 1e-28 seq27 134 2e-26 seq9 113 6e-20 >seq2 Length=5918456 Score = 141 bits (156), Expect = 1e-28 Identities = 423/641 (66%), Gaps = 24/641 (4%) Strand=Plus/Minus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 || ||||| || || || | || ||||| ||||| || || || | ||| || || Sbjct 905701 TTCTGGTAGTCTCCTACTCTCTTCTCGAAGAAATTTGTCTTCCCCTGCAACGAAATCAAC 905642 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410 ||||| ||||||||||||| | || || |||||||| || |||| | || ||| Sbjct 905641 TCCATCCAATCAAACGGATTAGCGACGTTATAAATTTTGCTATATCCGAGAGCAACGATC 905582 Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGT 33470 |||| ||| || |||||||| ||||| |||||| |||| |||||||| | | Sbjct 905581 AATCGATCAGCTACGAATTCGATATACTGACTCATCAGATCACTGTTCATTCCGACCA-A 905523 Query 33471 TTAACTGGAAGAGCCACAGTA-AGAAATTCTTGTTCAATGGATACCGCATTTGTTATAAT 33529 || | || | || | | | |||||| | || || || || | | || || Sbjct 905522 CGCACACGGAGTG-CATTGCAGATGAATTCTCGCTCGATATCCACTGCGTCGGATACGAT 905464 Query 33530 AAATCTAACGGTTTCTTCACT-CGGTGGATGT--AATAAA-TGTTTAAACATCAAACATG 33585 |||||||| |||||| | | | | | | | ||| ||| ||| ||||| | Sbjct 905463 CGATCTAACGTGTTCTTCGGTAAGCTTGTTCTTCAGCAAACTGT----ACAATAAACAAG 905408 Query 33586 CGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGG 33645 ||||||| ||||| || ||||||| | | ||||| ||| || | ||| ||||| |||| Sbjct 905407 CGAAATCACAGTGAAG-TCCTCGTCGCGAGAAATTAGTTCATT-GGAAATGTGAGGCCGG 905350 Query 33646 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTC 33705 |||| || || || ||||| |||||||| || | ||| || ||||| |||||||| | Sbjct 905349 GCATAAGCCCGCGTTTTTTCAGCCAAAAGATCGCGCAGAACGAGCCGGAGAAGAAGATGC 905290 Query 33706 CTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA-------CCGGCGCTGTCATGT 33758 |||| || |||||| || | || | || | || | || | ||| Sbjct 905289 CTTCCACGCAAGCAAAAGCGACGAGACGATCCGCGAAAGAAGAATCACACGAT-TCA--- 905234 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 ||||||| | ||||| | ||| || ||||| || | || || || || Sbjct 905233 ATCCACTCGAGCGCCCACTTGGCTTTACGGGCGACACACGGGACAGTGTCGATCGCGCGG 905174 Query 33819 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33878 |||||| || || | |||||| | |||||| || | | |||||| |||||| Sbjct 905173 AAGAGACGTGCCTTCTCGTCGGAATCTTTGATATAAGTTTCTAATAGAAGACTGTACATT 905114 Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 33919 || || || ||||| |||||||| ||||| || |||||||| Sbjct 905113 TCTGAGTGTATGTTCTCAATGGCGATCTGGAAACCGTAGAA 905073 >seq27 Length=2003651 Score = 134 bits (148), Expect = 2e-26 Identities = 298/441 (68%), Gaps = 12/441 (3%) Strand=Plus/Plus Query 33290 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33349 ||| ||||| ||||| || | || ||||| |||||||| || || | || || || Sbjct 1228364 TTTCTGGTACTCACCTACTCTCTTCTCGAAGAAATTAGTCTTACCCTGCAGCGAGATTAA 1228423 Query 33350 TTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAAT 33409 ||||| |||| |||||||| ||||||||||||||| | | || | | | Sbjct 1228424 CTCCATCCAATCGAACGGATTCACAACATTGTAAATTTTGTGATGACCGAGAGCGCCGAG 1228483 Query 33410 CAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAG 33469 ||||| ||| || |||||||| ||||| |||| | || | |||||||| | | Sbjct 1228484 CAATCGATCAGCAACGAATTCGATATACTGGCTCATTAAATCGCTGTTCATTCCGACCAA 1228543 Query 33470 TTTAACTGGAAGAGCCA--CAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATA 33527 ||| || || ||| | ||||| | || || || || | ||| Sbjct 1228544 CGCGCATGGGAGCGCGTTGCAG--ATGAATTCCCGCTCTATATCCACTGCGTCGATTACG 1228601 Query 33528 ATAAATCTAACGGTTTCTTCACTCGG--TG-GATGTAATAAA-TGTTTAAACATCAAACA 33583 || ||| ||| |||||| | || ||| || ||| ||| ||| ||||| Sbjct 1228602 ATCGATCGAACTTGTTCTTCGGAAAGCTTGTGATTTAGAAAACTGTATAAT----AAACA 1228657 Query 33584 TGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCC 33643 |||||||||||||| || || ||||| | | ||||| |||||| ||||| ||||| || Sbjct 1228658 AGCGAAATCGCAGTGAAGTCCTTCGTCGCGAGAAATTAGTTCGTTTGAAAATGTGAGGCC 1228717 Query 33644 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGAT 33703 |||||| || ||||| ||||| ||||| || || | | ||| || ||||| |||||||| Sbjct 1228718 GGGCATAAGACCACGTTTTTTCAGCCAGAAGATCGCACAGAACGAGCCGGAGAAGAAGAT 1228777 Query 33704 TCCTTCTACTGCAGCAAAGGC 33724 |||||||| |||||| || Sbjct 1228778 GCCTTCTACGCAAGCAAACGC 1228798 >seq9 Length=4860633 Score = 113 bits (124), Expect = 6e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 ||| || ||||| || |||||||| ||||| || |||||||| | ||| | | || Sbjct 1349991 AGTGCCAGCATTGAACAAGGTAGGCGAAGCATGAGTAAACCAGCGCTGAGACATCAAATG 1350050 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63780 ||| || | ||| | || || ||||| | ||| |||| ||| || || || ||||||| Sbjct 1350051 GTATGTTTTAATGACCGACTCAATATCATCCTTG-TGAACTCCCACAGCTACTCGCATTA 1350109 Query 63781 ACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63840 ||||||||| ||||||||||| | ||| | ||||| | || || | |||| Sbjct 1350110 GCATGTGCTGCGGTCTTTCAACCACCTTGCCAGACACCTTCAAGAGATACGACCTCTCCA 1350169 Query 63841 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 |||| ||||||||||| |||| || |||||| || ||||| || || Sbjct 1350170 AAGTCTTAAAACCAAAGTAGTCATAATCAAAGTCGCGGTCGTATATTAT 1350218 Score = 109 bits (120), Expect = 7e-19 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 |||||| ||||| | ||||| || |||| ||| | || | |||||| || | ||| || Sbjct 1349671 TCCTCCTTGATCAACGTATCGGGCAGTGTCGTTAAACACCCGCAACATCGGCACAATCCC 1349730 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 ||||| | ||||| ||||| ||||||| ||| | |||||||||||| || || Sbjct 1349731 ATTTGAAGTTCCATTTGTACCACGAATATAGCTACCAGTTGCACGAATATTATGAACAGA 1349790 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 | ||| |||||||| || |||| || | || ||| ||||| || ||||| || Sbjct 1349791 AACACCAATTCCCCCAGCAGATTTACTTATAACAGCACATTCCTTTAAAGTATCATAAAT 1349850 Query 63602 GCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63644 ||||| || || || || ||||| || || ||||||||| Sbjct 1349851 TCCTTCAATACTGTCTTCTTTCATGCAAATCAGGAAACAGCTA 1349893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629810546042880