Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq59 96.9 3e-15 seq9 84.2 2e-11 >seq59 Length=1347071 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/140 (76%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 11622 ACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAA 11681 ||| |||||| || |||||||| || | |||||||| | | ||||||||||| |||| Sbjct 1070944 ACAATAAACAAGCGAAATCACAGTGAAGTCCTTCGTCGCGAGAAATTAGTTCATTGGAAA 1071003 Query 11682 ATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCA-AATGAACCA 11740 |||| | |||||||| | || |||||||| | |||||| || || ||| || || || Sbjct 1071004 ATGTGAGGCCGGGCATAAGCCCGCGTTTTTTCAGCCAAAAGATCGC-GCAGAACGAGCCG 1071062 Query 11741 GAAAAGAATATTCCCTCCAC 11760 || ||||| || || ||||| Sbjct 1071063 GAGAAGAAGATGCCTTCCAC 1071082 >seq9 Length=4860633 Score = 84.2 bits (92), Expect = 2e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 37183 GTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATT 37242 ||||||||||||| | | ||||| || | || || ||| ||| || |||||||||||| Sbjct 1347178 GTATATGGTTCAAAGCATTCATTGTTTCCTAGAATCTGACTTGTTGAAGCAGTAGGCATT 1347237 Query 37243 GGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTC 37302 || || | ||||| || || | ||||| || ||| | | | | | || ||| Sbjct 1347238 GGAGCAACCAGAAGAGAGTTCCTTACTCCATTCTTAGAAATCATTTCTCTCAAATCCTTC 1347297 Query 37303 CAATCCCATAAATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAA 37351 |||||||||| ||||| ||| || |||||||||| |||||||| Sbjct 1347298 CAATCCCATAGATCTGATGGAATCACATTCCACATATCAGGTTGTAGAA 1347346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468519552522240