Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq34 104 2e-17 seq143 96.9 3e-15 seq251 87.8 2e-12 seq300 82.4 8e-11 seq59 82.4 8e-11 seq32 82.4 8e-11 >seq34 Length=3699824 Score = 104 bits (114), Expect = 2e-17 Identities = 141/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 139573 CTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATA 139632 ||| || |||||||| || ||| | |||| ||| || ||||| || |||||| | Sbjct 904623 CTCCTTCTGAATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCCAGCTGCTTCCCAGCAAA 904682 Query 139633 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCT 139691 ||||| | |||||||| ||||| |||||||||||||| ||| |||| | || | | Sbjct 904683 TATCAGCCTCTGCTGATCCGGAGGGATGCCTTCTTTGTC-CTGAATTTTCGCCTTCACAT 904741 Query 139692 GTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTA 139751 || | ||||| | | ||||||||| | ||| | ||||| ||||| | || |||| Sbjct 904742 TATCGATCGTGTCCGAGCTCTCCACCTCCAGGGTGATGGTCTTTCCGGTAAGGGTCTTTA 904801 Query 139752 CGAATATTTGCATA 139765 | |||||||||||| Sbjct 904802 CAAATATTTGCATA 904815 >seq143 Length=574977 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 |||||| | ||||| ||| || || || || ||||||||||| | |||| ||| Sbjct 166509 CAAAACGAGGTGAAGCGTGGATTCCTTCTGGATGTTATAATCAGCGAGCGTGCGGCCGTC 166568 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 |||||||| || |||||| |||| || | ||||| || || || ||||| || ||||| Sbjct 166569 CTCGAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTC 166628 Query 139672 GGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGT 139731 ||| || ||| | | || | || || | || ||| ||||| | ||| | || Sbjct 166629 TTGGATCTTGGCTTTGACGTTATCGATGGTATCCGAGGACTCGACCTCGAGGGTGATGGT 166688 Query 139732 CTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||| | || || ||||| || ||||| Sbjct 166689 CTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 166721 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 |||||| | ||||| ||| || || || || ||||||||||| | |||| ||| Sbjct 166053 CAAAACGAGGTGAAGCGTGGATTCCTTCTGGATGTTATAATCAGCGAGCGTGCGGCCGTC 166112 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 |||||||| || ||||| |||| || | |||||||| || || ||||| || ||||| Sbjct 166113 CTCGAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGATCTGGGGGGATGCCCTCCTTGTC 166172 Query 139672 GGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGT 139731 ||| || || | | || | || || | || ||| ||||| | ||| | || Sbjct 166173 TTGGATCTTGGCCTTGACGTTGTCGATGGTATCCGAGGACTCGACCTCGAGGGTGATGGT 166232 Query 139732 CTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||||||| | || || ||||| || |||||| Sbjct 166233 CTTGCCGGTTAGAGTCTTGACGAAGATCTGCATA 166266 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 |||||| | ||||| ||| || || || || ||||||||||| | |||| || Sbjct 166281 CAAAACGAGGTGAAGCGTGGATTCCTTCTGGATGTTATAATCAGCGAGCGTGCGGCCATC 166340 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 || || || || |||||| |||| || | |||||||| || || ||||| || ||||| Sbjct 166341 CTCAAGTTGCTTGCCAGCAAAGATGAGCCTCTGCTGATCTGGGGGAATGCCCTCCTTGTC 166400 Query 139672 GGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGT 139731 ||| || || | | || | ||||| | || ||| ||||| | ||| | || Sbjct 166401 TTGGATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGT 166460 Query 139732 CTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||||||| | || || ||||| || |||||| Sbjct 166461 CTTGCCGGTGAGAGTCTTGACGAAGATCTGCATA 166494 >seq251 Length=123057 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 |||||| | ||||| ||| || || || || ||||||||||| | |||| ||| Sbjct 99203 CAAAACGAGGTGAAGCGTGGATTCCTTCTGGATGTTATAATCAGCGAGCGTGCGGCCGTC 99262 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 |||||||| || ||||| | || || | ||||| || || || ||||| || ||||| Sbjct 99263 CTCGAGCTGCTTGCCAGCGAAAATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTC 99322 Query 139672 GGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGT 139731 ||| || ||| | | || | || || | || ||| ||||| | ||| | || Sbjct 99323 TTGGATCTTGGCTTTGACGTTGTCGATGGTATCCGAGGACTCGACCTCCAGGGTGATGGT 99382 Query 139732 CTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||| | || || ||||| || ||||| Sbjct 99383 CTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 99415 >seq300 Length=293291 Score = 82.4 bits (90), Expect = 8e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 ||||| || || | ||| | ||| | || | |||||||| || || ||||| ||||| Sbjct 10485 TGGCCACCACGGAGACGGAGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAATCT 10544 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | |||| |||||||||||| || || || | ||||| | |||||||| || Sbjct 10545 GCAAGGGTGCGGCCGTCTTCGAGCTGCTTGCCCGCGAAAATCAGCCTCTGCTGATCCGGG 10604 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTC 139713 || || || || ||||| ||| | |||| ||| | | || | ||| || | | || Sbjct 10605 GGAATTCCCTCCTTGTC-CTGAATCTTTGCTTTGACGTTATCAATTGTATCAGATGATTC 10663 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| | || | ||||||||||| | || || ||||| || |||||| Sbjct 10664 AACCTCCAGCGTGATTGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATA 10715 Score = 82.4 bits (90), Expect = 8e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || ||||| || || ||| |||| || | ||||| || ||||| || ||||| ||| Sbjct 11016 TCCTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGAGGAATCCCTTCCTTG 11075 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || ||| | | || | ||| || | || ||||||||||| ||| | Sbjct 11076 TCCTGGATCTTGGCTTTAACATTGTCGATTGTATCTGAGGACTCCACCTCAAGGGTGATG 11135 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||||| | || || ||||| || ||||| Sbjct 11136 GTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 11170 >seq59 Length=1347071 Score = 82.4 bits (90), Expect = 8e-11 Identities = 122/168 (73%), Gaps = 4/168 (2%) Strand=Plus/Minus Query 52610 CTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGG-TAGT 52668 |||| || || ||||| ||||| |||||| |||||||| | || || || || | || Sbjct 1071114 CTTTCGCGGATCGTCTCGTCGCTTTTGCTTGCGTGGAAGGCATCTTCTTCTCCGGCTCGT 1071055 Query 52669 TTTGCGGCAATATTTTACATCAAAAC-CTTGGGCATAATGCCCGGCCTCACGTTTAGCAA 52727 | |||| | || |||| | |||| | |||| || ||||||||||||| ||| ||| Sbjct 1071054 TCTGCG-CGATCTTTTGGCTGAAAAAACGCGGGCTTA-TGCCCGGCCTCACATTTTCCAA 1070997 Query 52728 CGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTGTTT 52775 || | || || |||||||||||| | ||| ||||| || ||||| Sbjct 1070996 TGAACTAATTTCTCGCGACGAAGGACTTCACTGTGATTTCGCTTGTTT 1070949 >seq32 Length=1954954 Score = 82.4 bits (90), Expect = 8e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 || ||| | ||||| || ||||| || || ||||| ||||| | || | ||| Sbjct 590308 CAGAACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGCAAGGGTACGGCCGTC 590367 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 |||||||| || || || |||| || | |||||||| ||||| ||||| || ||||| Sbjct 590368 CTCGAGCTGCTTCCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGAATGCCCTCCTTGTC 590427 Query 139672 GGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGT 139731 ||| || || | | || | ||||| | | ||| ||||| | ||| | || Sbjct 590428 CTGGATCTTCGCCTTAACGTTGTCGATCGTGTCTGACGACTCAACCTCGAGGGTGATGGT 590487 Query 139732 CTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| ||||| | || || |||||||||||||| Sbjct 590488 CTTCCCGGTGAGAGTCTTAACGAATATTTGCAT 590520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496058444083200