Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2 161 1e-34 seq27 127 3e-24 seq9 127 3e-24 >seq2 Length=5918456 Score = 161 bits (178), Expect = 1e-34 Identities = 430/643 (67%), Gaps = 28/643 (4%) Strand=Plus/Minus Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728 || ||||| || || || | || ||||| ||||| || || || | ||| || || Sbjct 905701 TTCTGGTAGTCTCCTACTCTCTTCTCGAAGAAATTTGTCTTCCCCTGCAACGAAATCAAC 905642 Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 49788 ||||| ||||||||||||| | || ||||||||||| || |||| | || ||| Sbjct 905641 TCCATCCAATCAAACGGATTAGCGACGTTATAAATTTTGCTATATCCGAGAGCAACGATC 905582 Query 49789 AATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 49848 |||| ||| || || ||||| ||||| |||||| |||| |||||||| | | Sbjct 905581 AATCGATCAGCTACGAATTCGATATACTGACTCATCAGATCACTGTTCATTCCGACCA-A 905523 Query 49849 TTAACTGGAAGAGC--CGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAA 49906 || | || || |||| | |||||| | || || || || || | || | Sbjct 905522 CGCACACGGAGTGCATTGCAG--ATGAATTCTCGCTCGATATCCACTGCGTCGGATACGA 905465 Query 49907 TAGATCTAACGGTTTCTTCACTCGG--TG-GATGCAATAAA-TGTTTAAACATCAAACAT 49962 | ||||||||| |||||| | | || | || ||| ||| ||| ||||| Sbjct 905464 TCGATCTAACGTGTTCTTCGGTAAGCTTGTTCTTCAGCAAACTGT----ACAATAAACAA 905409 Query 49963 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCG 50022 |||||||| ||||| || ||||||| | | ||||||||| |||| ||| ||||| ||| Sbjct 905408 GCGAAATCACAGTGAAG-TCCTCGTCGCGAGAAATTAGTTCATTGG-AAATGTGAGGCCG 905351 Query 50023 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAAGAT 50081 ||||| || || || ||||| |||||||| || | |||| || || || || |||||||| Sbjct 905350 GGCATAAGCCCGCGTTTTTTCAGCCAAAAGATCG-CGCAGAACGAGCCGGAGAAGAAGAT 905292 Query 50082 TCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAA-------CTGGCGCTGTCAT 50134 ||||| || ||||| || || || | || | || | || | ||| Sbjct 905291 GCCTTCCACGCAAGCAAAAGCGACGAGACGATCCGCGAAAGAAGAATCACACGAT-TCA- 905234 Query 50135 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 50194 ||||||| | ||||| | ||| || ||||| || | || || || || Sbjct 905233 --ATCCACTCGAGCGCCCACTTGGCTTTACGGGCGACACACGGGACAGTGTCGATCGCGC 905176 Query 50195 TAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACA 50254 |||||| || || | |||||| | |||||| || | | |||||| |||| Sbjct 905175 GGAAGAGACGTGCCTTCTCGTCGGAATCTTTGATATAAGTTTCTAATAGAAGACTGTACA 905116 Query 50255 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 50297 |||| || || ||||| |||||||| ||||| || |||||||| Sbjct 905115 TTTCTGAGTGTATGTTCTCAATGGCGATCTGGAAACCGTAGAA 905073 >seq27 Length=2003651 Score = 127 bits (140), Expect = 3e-24 Identities = 302/448 (67%), Gaps = 14/448 (3%) Strand=Plus/Plus Query 49668 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 49727 ||| ||||| ||||| || | || ||||| |||||||| || || | || || || Sbjct 1228364 TTTCTGGTACTCACCTACTCTCTTCTCGAAGAAATTAGTCTTACCCTGCAGCGAGATTAA 1228423 Query 49728 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 49787 ||||| |||| |||||||| |||||| |||||||| | | || | | | Sbjct 1228424 CTCCATCCAATCGAACGGATTCACAACATTGTAAATTTTGTGATGACCGAGAGCGCCGAG 1228483 Query 49788 CAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 49847 ||||| ||| || || ||||| ||||| |||| | || | |||||||| | | Sbjct 1228484 CAATCGATCAGCAACGAATTCGATATACTGGCTCATTAAATCGCTGTTCATTCCGACCAA 1228543 Query 49848 TTTAACTGGAAGAGCC--GCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATA 49905 ||| || || |||| | ||||| | || || || || || ||| Sbjct 1228544 CGCGCATGGGAGCGCGTTGCAG--ATGAATTCCCGCTCTATATCCACTGCGTCGATTACG 1228601 Query 49906 ATAGATCTAACGGTTTCTTCACTCGG--TG-GATGCAATAAA-TGTTTAAACATCAAACA 49961 || |||| ||| |||||| | || ||| | ||| ||| ||| ||||| Sbjct 1228602 ATCGATCGAACTTGTTCTTCGGAAAGCTTGTGATTTAGAAAACTGTATAAT----AAACA 1228657 Query 49962 TGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCC 50021 |||||||||||||| || || ||||| | | |||||||||||| ||||| ||||| || Sbjct 1228658 AGCGAAATCGCAGTGAAGTCCTTCGTCGCGAGAAATTAGTTCGTTTGAAAATGTGAGGCC 1228717 Query 50022 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAAGA 50080 |||||| || ||||| ||||| ||||| || || | | || || || || || ||||||| Sbjct 1228718 GGGCATAAGACCACGTTTTTTCAGCCAGAAGATCG-CACAGAACGAGCCGGAGAAGAAGA 1228776 Query 50081 TTCCTTCTACTGCGGCAAAGGCAACAAG 50108 | |||||||| ||||| || || || Sbjct 1228777 TGCCTTCTACGCAAGCAAACGCGACGAG 1228804 >seq9 Length=4860633 Score = 127 bits (140), Expect = 3e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 ||| || ||||| || |||||||| ||||| || |||||||| | ||||| | || Sbjct 1349991 AGTGCCAGCATTGAACAAGGTAGGCGAAGCATGAGTAAACCAGCGCTGAGACATCAAATG 1350050 Query 80394 GTACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTA 80452 ||| || | ||| | || || ||||| | ||| |||| ||| || || || ||||||| Sbjct 1350051 GTATGTTTTAATGACCGACTCAATATCATCCTTG-TGAACTCCCACAGCTACTCGCATTA 1350109 Query 80453 ACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCA 80512 ||||||||| ||||||||||| | |||| | | ||||| | || || | |||| Sbjct 1350110 GCATGTGCTGCGGTCTTTCAACCACCTTGCCAGACACCTTCAAGAGATACGACCTCTCCA 1350169 Query 80513 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 |||| ||||||||||| |||| || |||||| || ||||| || || Sbjct 1350170 AAGTCTTAAAACCAAAGTAGTCATAATCAAAGTCGCGGTCGTATATTAT 1350218 Score = 114 bits (126), Expect = 2e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| ||||| | ||||| || |||| ||| | || | |||||| || | ||| || Sbjct 1349671 TCCTCCTTGATCAACGTATCGGGCAGTGTCGTTAAACACCCGCAACATCGGCACAATCCC 1349730 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| || || ||||| || || |||||||| ||| | |||||||||||| || || Sbjct 1349731 ATTTGAAGTTCCATTTGTACCACGAATATAGCTACCAGTTGCACGAATATTATGAACAGA 1349790 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| |||||||| || |||| || | || ||| ||||| |||||||| || Sbjct 1349791 AACACCAATTCCCCCAGCAGATTTACTTATAACAGCACATTCCTTTAAAGTATCATAAAT 1349850 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316 || || || || || || ||||| || || ||||||||| Sbjct 1349851 TCCTTCAATACTGTCTTCTTTCATGCAAATCAGGAAACAGCTA 1349893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718260755389440