Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq27 127 2e-24 >seq27 Length=2003651 Score = 127 bits (140), Expect = 2e-24 Identities = 248/362 (69%), Gaps = 6/362 (2%) Strand=Plus/Plus Query 13656 TAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 13715 |||||| || ||||| || ||||| || || || | | ||| ||||||||||||||||| Sbjct 1228652 TAAACAAGCGAAATCGCAGTGAAGTCCTTCGTCGCGAGAAATTAGTTCGTTTGAAAATGT 1228711 Query 13716 TAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAA 13775 | || ||||| | || |||||||| | ||| || || ||| ||| || ||||| || Sbjct 1228712 GAGGCCGGGCATAAGACCACGTTTTTTCAGCCAGAAGATCGCACAGAACGAGCCGGAGAA 1228771 Query 13776 GAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTT-TTTTGT 13834 ||| || || || || ||||||||| | || |||||| | || || |||| | || Sbjct 1228772 GAAGATGCCTTCTACGCAAGCAAACGCGACGAGGCGTTCTGCGAATGAAGCTTCGTCTGA 1228831 Query 13835 TTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTG 13894 || | ||||| ||||| | || ||| || | | | ||| ||||| | Sbjct 1228832 TTCA-ATCCACCGCAGCGCCCACTGAGCTTTCCGGGCAACACATGGGACTGTATCGATCG 1228890 Query 13895 CATTGAATAAATGTTCCTTCTCTT--TAGTACTTGAAATGTATGTATCAATAAGTAAGCT 13952 | ||| | | | |||||| | ||| ||| || ||||| || | || | ||| Sbjct 1228891 CGCGGAAGAGACGCGACTTCTCGTCGGAGTCTTTG--ATATATGTTTCCAATAGAAGGCT 1228948 Query 13953 ATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTC 14012 |||||||| ||||||||||| || || || ||||| || ||||| || || ||||| Sbjct 1228949 GTACATTTCTGAGTGTATGTTCTCGATTGCGATCTGGAAGCCATAGAATGCCCTTGCTTC 1229008 Query 14013 TG 14014 || Sbjct 1229009 TG 1229010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478583439805440