Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq34 105 5e-18 seq2 84.2 2e-11 >seq34 Length=3699824 Score = 105 bits (116), Expect = 5e-18 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | ||||||| ||||| |||||||||||| || | |||||| |||| Sbjct 905044 CCGCCACGGAGACGCAACACCAGATGGAGAGTGCTCTCCTTCTGGATATTGTAGTCGGCA 905103 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| |||| ||||| || || || |||||||||| | ||| || || | || Sbjct 905104 AGGGTACGGCCGTCTTCCAACTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCTGGGGGA 905163 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | |||||| || || ||| ||| | || || || ||| ||||| ||| ||||| Sbjct 905164 ATACCTTCCTTGTC-CTGAATCTTTGCCTTCACATTGTCAATGGTGTC-AGAGCTCTCGA 905221 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || || || || || ||||| ||||| || || ||||| Sbjct 905222 CTTCCAAGGTGATGGTCTTCCCAGTGAGAGTCTTCACGAAGATCTGCAT 905270 Score = 82.4 bits (90), Expect = 6e-11 Identities = 92/122 (75%), Gaps = 1/122 (1%) Strand=Plus/Plus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 ||||| |||| |||||||||||| || | |||||| |||| | ||||| |||| || Sbjct 904833 CACCAGGTGGAGAGTGCTCTCCTTCTGGATATTGTAGTCGGCAAGGGTACGGCCGTCTTC 904892 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 |||||| || || |||||||||| | ||| || || | || | |||||| || || || Sbjct 904893 CAATTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCCGGGGGAATACCTTCCTTGTC-CT 904951 Query 43020 GA 43021 || Sbjct 904952 GA 904953 >seq2 Length=5918456 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 |||||||| | || || |||| || || | | || ||||| || ||||| |||||| Sbjct 561879 TCCTTTTGGATGTTATAGTCGGCCAGAGTTCTGCCATCTTCCAACTGCTTGCCTGCAAAA 561820 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 ||||| ||||| ||||| | || | || || || || |||| | | || || || Sbjct 561819 ATCAACCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTG 561760 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 | | |||||| || ||| || || | || ||||| || ||||| || || || || Sbjct 561759 TCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATAGTCTTCCCGGTGAGGGTCTTGACG 561700 Query 43099 AAAATTTGCAT 43109 ||||||||||| Sbjct 561699 AAAATTTGCAT 561689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381365435443968