Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2 154 2e-32 seq27 125 1e-23 seq9 118 1e-21 >seq2 Length=5918456 Score = 154 bits (170), Expect = 2e-32 Identities = 438/659 (66%), Gaps = 18/659 (3%) Strand=Plus/Minus Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 || ||||| || || || | || ||||| ||||| ||||| || | ||| || || Sbjct 905701 TTCTGGTAGTCTCCTACTCTCTTCTCGAAGAAATTTGTCTTCCCCTGCAACGAAATCAAC 905642 Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 41893 ||||| ||||||||||||| | || ||||||||||| || |||| | || ||| Sbjct 905641 TCCATCCAATCAAACGGATTAGCGACGTTATAAATTTTGCTATATCCGAGAGCAACGATC 905582 Query 41894 AATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 41953 |||| ||| || | |||||| ||||| |||||| |||| |||||||| | | Sbjct 905581 AATCGATCAGCTACGAATTCGATATACTGACTCATCAGATCACTGTTCATTCCGACCA-A 905523 Query 41954 TTAACTGGAAGAGCCACAGTA-AGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 42012 || | || | || | | | |||||| | || ||| || ||||| | || || Sbjct 905522 CGCACACGGAGTG-CATTGCAGATGAATTCTCGCTCGATATCCACTGCGTCGGATACGAT 905464 Query 42013 AGATCTTACTGTTTCTTCACTCGG--TG-GATACAATAAA-TGTTTAAACATCAAACATG 42068 ||||| || |||||| | | || | || ||| ||| ||| ||||| | Sbjct 905463 CGATCTAACGTGTTCTTCGGTAAGCTTGTTCTTCAGCAAACTGT----ACAATAAACAAG 905408 Query 42069 CGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGG 42128 ||||||| ||||| || |||| || | | ||||| ||| |||| ||| ||||| |||| Sbjct 905407 CGAAATCACAGTGAAG-TCCTCGTCGCGAGAAATTAGTTCATTGG-AAATGTGAGGCCGG 905350 Query 42129 GCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAAGATT 42187 |||| || || || ||||| |||||||| || | |||| || || || || |||||||| Sbjct 905349 GCATAAGCCCGCGTTTTTTCAGCCAAAAGATCG-CGCAGAACGAGCCGGAGAAGAAGATG 905291 Query 42188 CCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC---ATAACCGGCACTGTCATGTATC 42244 ||||| || ||||| || | || | || | | || ||| | ||| Sbjct 905290 CCTTCCACGCAAGCAAAAGCGACGAGACGATCCGCGAAAGAAGAATCACACGATTCAATC 905231 Query 42245 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 42304 |||| | ||||| | ||| || ||||| || | || || || || ||| Sbjct 905230 CACTCGAGCGCCCACTTGGCTTTACGGGCGACACACGGGACAGTGTCGATCGCGCGGAAG 905171 Query 42305 AGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCT 42364 ||| || || | |||||| | ||| || || | | |||||| ||||||||| Sbjct 905170 AGACGTGCCTTCTCGTCGGAATCTTTGATATAAGTTTCTAATAGAAGACTGTACATTTCT 905111 Query 42365 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTG 42423 || || ||||| |||||||| ||||| || |||||||| || ||||| | ||||| Sbjct 905110 GAGTGTATGTTCTCAATGGCGATCTGGAAACCGTAGAATGCCCTCGCCTCCGCTACCTG 905052 >seq27 Length=2003651 Score = 125 bits (138), Expect = 1e-23 Identities = 291/430 (68%), Gaps = 14/430 (3%) Strand=Plus/Plus Query 41773 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATT 41832 ||| ||||| ||||| || | || ||||| ||||||||||| || | || || || Sbjct 1228364 TTTCTGGTACTCACCTACTCTCTTCTCGAAGAAATTAGTCTTACCCTGCAGCGAGATTAA 1228423 Query 41833 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 41892 ||||| |||| |||||||| |||||| |||||||| | | || | | | Sbjct 1228424 CTCCATCCAATCGAACGGATTCACAACATTGTAAATTTTGTGATGACCGAGAGCGCCGAG 1228483 Query 41893 CAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 41952 ||||| ||| || | |||||| ||||| |||| | || | |||||||| | | Sbjct 1228484 CAATCGATCAGCAACGAATTCGATATACTGGCTCATTAAATCGCTGTTCATTCCGACCAA 1228543 Query 41953 TTTAACTGGAAGAGCCA--CAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATA 42010 ||| || || ||| | ||||| | || ||| || ||||| ||| Sbjct 1228544 CGCGCATGGGAGCGCGTTGCAG--ATGAATTCCCGCTCTATATCCACTGCGTCGATTACG 1228601 Query 42011 ATAGATCTTACTGTTTCTTCACTCGG--TG-GATACAATAAA-TGTTTAAACATCAAACA 42066 || |||| ||| |||||| | || ||| | ||| ||| ||| ||||| Sbjct 1228602 ATCGATCGAACTTGTTCTTCGGAAAGCTTGTGATTTAGAAAACTGTATAAT----AAACA 1228657 Query 42067 TGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCC 42126 |||||||||||||| || || || || | | ||||| |||||| ||||| ||||| || Sbjct 1228658 AGCGAAATCGCAGTGAAGTCCTTCGTCGCGAGAAATTAGTTCGTTTGAAAATGTGAGGCC 1228717 Query 42127 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAAGA 42185 |||||| || ||||| ||||| ||||| || || | | || || || || || ||||||| Sbjct 1228718 GGGCATAAGACCACGTTTTTTCAGCCAGAAGATCG-CACAGAACGAGCCGGAGAAGAAGA 1228776 Query 42186 TTCCTTCTAC 42195 | |||||||| Sbjct 1228777 TGCCTTCTAC 1228786 >seq9 Length=4860633 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 ||| || ||||| || |||||||| ||||| || |||||||| | ||||| | || Sbjct 1349991 AGTGCCAGCATTGAACAAGGTAGGCGAAGCATGAGTAAACCAGCGCTGAGACATCAAATG 1350050 Query 72477 GTACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACACGCATTA 72535 ||| || | ||| | || || ||||| | ||| || | ||| || || || ||||||| Sbjct 1350051 GTATGTTTTAATGACCGACTCAATATCATCCTTG-TGAACTCCCACAGCTACTCGCATTA 1350109 Query 72536 ACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCA 72595 ||| ||||| ||||||||||| | |||| | | ||||| | || || | |||| Sbjct 1350110 GCATGTGCTGCGGTCTTTCAACCACCTTGCCAGACACCTTCAAGAGATACGACCTCTCCA 1350169 Query 72596 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 |||| ||||||||||| |||| || |||||| || ||||| || || Sbjct 1350170 AAGTCTTAAAACCAAAGTAGTCATAATCAAAGTCGCGGTCGTATATTAT 1350218 Score = 109 bits (120), Expect = 7e-19 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 |||||| ||||| | ||||| || |||| ||| | || | |||||| || | ||| || Sbjct 1349671 TCCTCCTTGATCAACGTATCGGGCAGTGTCGTTAAACACCCGCAACATCGGCACAATCCC 1349730 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 ||| || | ||||| || || |||||||| ||| | ||||||||||| || || Sbjct 1349731 ATTTGAAGTTCCATTTGTACCACGAATATAGCTACCAGTTGCACGAATATTATGAACAGA 1349790 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | ||| |||||||| || |||| || | || ||| ||||| |||||||| || Sbjct 1349791 AACACCAATTCCCCCAGCAGATTTACTTATAACAGCACATTCCTTTAAAGTATCATAAAT 1349850 Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 72399 || || ||||| || || ||||| || || ||||||||| Sbjct 1349851 TCCTTCAATACTGTCTTCTTTCATGCAAATCAGGAAACAGCTA 1349893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671131683240960