Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31]
896 sequences; 295,462,401 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq34 89.7 5e-13
seq2 84.2 2e-11
>seq34
Length=3699824
Score = 89.7 bits (98), Expect = 5e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 142994 TCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAG 143053
|| || || |||||||| ||| | |||| ||| || || || || |||||| |
Sbjct 904624 TCCTTCTGAATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCCAGCTGCTTCCCAGCAAAT 904683
Query 143054 ATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGT 143113
||||| | |||||||| ||||| |||||||||||||| |||||| || | |
Sbjct 904684 ATCAGCCTCTGCTGATCCGGAGGGATGCCTTCTTTGTCCTGAATTTTCGCCTTCACATTA 904743
Query 143114 TCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACG 143173
|| | |||||||| | || || || | || | ||||| ||||| | || |||||
Sbjct 904744 TCGATCGTGTCCGAGCTCTCCACCTCCAGGGTGATGGTCTTTCCGGTAAGGGTCTTTACA 904803
Query 143174 AATATTTGCATA 143185
||||||||||||
Sbjct 904804 AATATTTGCATA 904815
>seq2
Length=5918456
Score = 84.2 bits (92), Expect = 2e-11
Identities = 133/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 142994 TCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAG 143053
|| || || |||||||||||| | ||| ||| ||| ||||| || || ||||| |
Sbjct 561195 TCCTTCTGGATGTTGTAATCGGCGAGTGTTCTCCCGTCCTCGAGCTGCTTGCCAGCGAAA 561136
Query 143054 ATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGT 143113
||||| | |||||||| || || || || || ||||| ||| || ||||| |
Sbjct 561135 ATCAGCCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGAATCTTGGCTTTTACGTTG 561076
Query 143114 TCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACG 143173
|| | ||||||| || ||| || |||| || | |||||||| || | || || ||
Sbjct 561075 TCGATGGTGTCCGAGGATTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACA 561016
Query 143174 AATATTTGCAT 143184
|| || |||||
Sbjct 561015 AAGATCTGCAT 561005
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 507008721438720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |