Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq34 89.7 5e-13 seq2 84.2 2e-11 >seq34 Length=3699824 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 142994 TCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAG 143053 || || || |||||||| ||| | |||| ||| || || || || |||||| | Sbjct 904624 TCCTTCTGAATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCCAGCTGCTTCCCAGCAAAT 904683 Query 143054 ATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGT 143113 ||||| | |||||||| ||||| |||||||||||||| |||||| || | | Sbjct 904684 ATCAGCCTCTGCTGATCCGGAGGGATGCCTTCTTTGTCCTGAATTTTCGCCTTCACATTA 904743 Query 143114 TCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACG 143173 || | |||||||| | || || || | || | ||||| ||||| | || ||||| Sbjct 904744 TCGATCGTGTCCGAGCTCTCCACCTCCAGGGTGATGGTCTTTCCGGTAAGGGTCTTTACA 904803 Query 143174 AATATTTGCATA 143185 |||||||||||| Sbjct 904804 AATATTTGCATA 904815 >seq2 Length=5918456 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 142994 TCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAG 143053 || || || |||||||||||| | ||| ||| ||| ||||| || || ||||| | Sbjct 561195 TCCTTCTGGATGTTGTAATCGGCGAGTGTTCTCCCGTCCTCGAGCTGCTTGCCAGCGAAA 561136 Query 143054 ATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGT 143113 ||||| | |||||||| || || || || || ||||| ||| || ||||| | Sbjct 561135 ATCAGCCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGAATCTTGGCTTTTACGTTG 561076 Query 143114 TCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACG 143173 || | ||||||| || ||| || |||| || | |||||||| || | || || || Sbjct 561075 TCGATGGTGTCCGAGGATTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACA 561016 Query 143174 AATATTTGCAT 143184 || || ||||| Sbjct 561015 AAGATCTGCAT 561005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507008721438720