Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq34 91.5 1e-13 seq53 89.7 4e-13 >seq34 Length=3699824 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || || || || ||||||||||| || | | ||||||| || ||| Sbjct 905296 TGAAGAGTAGACTCCTTCTGGATGTTGTAATCAGCAAGGGTACGACCGTCTTCCAACTGT 905355 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || |||||| | || | | ||| ||||| |||||||| || ||||| ||||| Sbjct 905356 TTCCCAGCGAAGATGAGCCTTTGCTGGTCCGGAGGAATTCCCTCCTTGTCTTGGATTTTT 905415 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||||||| | || || || ||| |||| || || | || ||||| || || || Sbjct 905416 GCCTTTACATTGTCGATCGTGTCGGAGCTTTCGACCTCGAGAGTGATGGTCTTCCCGGTT 905475 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 |||||||| ||||| || ||||| Sbjct 905476 AGAGTTTTGACAAAGATCTGCAT 905498 >seq53 Length=1478458 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | || || || | |||||| || || || || || ||||||||||| | Sbjct 997431 CCACCGCGAAGTCGTAGCACCAGATGAAGAGTAGACTCCTTCTGGATGTTGTAATCAGCT 997372 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| | || || | || || || ||| | || | | ||| ||||| ||| Sbjct 997371 AGGGTTCTGCCATCCTCGAGCTGCTTCCCGGCGAAAATGAGTCTTTGCTGGTCTGGAGGA 997312 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||||| || ||||| ||| || ||| |||||| | || || || || | || || Sbjct 997311 ATTCCCTCCTTGTCCTGAATCTTAGCT-TTTACATTGTCAATAGTGTCAGAGCTCTCGAC 997253 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| ||||| || |||||||||||||| || || |||||||| Sbjct 997252 CTCGAGGGTGATGGTCTTCCCTGTCAGAGTTTTCACGAAGATTTGCAT 997205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362175245003136