Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq53 93.3 4e-14 seq2 91.5 1e-13 seq32 89.7 4e-13 seq251 86.0 5e-12 seq34 86.0 5e-12 seq143 84.2 2e-11 >seq53 Length=1478458 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/216 (71%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 18829 TAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTC 18888 || ||||| || | ||||||||||| || || |||||||| || | ||| || | || Sbjct 997417 TAGCACCAGATGAAGAGTAGACTCCTTCTGGATGTTGTAATCAGCTAGGGTTCTGCCATC 997358 Query 18889 CTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 ||| ||||| || || || |||| ||||| ||||| || || | ||||| ||||| Sbjct 997357 CTCGAGCTGCTTCCCGGCGAAAATGAGTCTTTGCTGGTCTGGAGGAATTCCCTCCTTGTC 997298 Query 18949 GGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTC-CG-TTTCGACGGTAAT 19005 ||| || |||||| | | | | ||| | ||| |||| || |||| ||| || Sbjct 997297 CTGAATCTTAGCTTTTACATTGTCAATAGT---GTCAGAGCTCTCGACCTCGAGGGTGAT 997241 Query 19006 GGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| || ||||| | |||||| || || |||||||| Sbjct 997240 GGTCTTCCCTGTCAGAGTTTTCACGAAGATTTGCAT 997205 >seq2 Length=5918456 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || || |||||||| || || || || |||| ||| || | || || Sbjct 561898 CACCAGGTGGAGGGTTGATTCCTTTTGGATGTTATAGTCGGCCAGAGTTCTGCCATCTTC 561839 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 || ||| || || ||| |||| | | |||||||||| ||| | |||||| ||||| Sbjct 561838 CAACTGCTTGCCTGCAAAAATCAACCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTG 561779 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||| || || | | ||| || ||| || ||| |||| ||| || || || Sbjct 561778 GATCTTCGCCTTCACGTTGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATAGTCTT 561719 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || ||||| ||||||||||| Sbjct 561718 CCCGGTGAGGGTCTTGACGAAAATTTGCAT 561689 >seq32 Length=1954954 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| | || ||| | || | ||| | || |||||||| || || ||||||||||| Sbjct 590294 CCTCCCCTCAGCCTCAGAACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGCA 590353 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | ||||||| ||||| || || || | ||||| |||||||||||| || Sbjct 590354 AGGGTACGGCCGTCCTCGAGCTGCTTCCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGA 590413 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | |||||| ||||| || ||| || || | | ||| || || | ||| Sbjct 590414 ATGCCCTCCTTGTCCTGGATCTTCGCCTTAACGTTGTCGATCGTGTCTGACGACTCAACC 590473 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 |||| ||| ||||| || || || | ||| || || || |||||||| Sbjct 590474 TCGAGGGTGATGGTCTTCCCGGTGAGAGTCTTAACGAATATTTGCAT 590520 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || ||||||||||| || ||||| || || | || | |||| || |||||||| || Sbjct 589868 GTCGACTCCTTTTGGATGTTGTAGTCGGCAAGGGTACGGCCGTCTTCAAGCTGTTTGCCG 589927 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | ||||| |||||||||||| || | ||||| ||||| || ||| ||| Sbjct 589928 GCAAAGATAAGCCTCTGCTGATCCGGAGGAATACCCTCCTTGTCCTGGATCTTCGCCTTT 589987 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | | ||||| || ||| || | ||| || || || || || | || Sbjct 589988 ACGTTGTCAATCGTATCTGAAGACTCAACCTCCAAGGTGATCGTCTTCCCAGTGAGTGTC 590047 Query 19025 TTGACAAAAATTTGCAT 19041 |||||||| |||||||| Sbjct 590048 TTGACAAAGATTTGCAT 590064 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| | || ||| | || | ||| | || |||||||| || || |||||||| || Sbjct 590066 CCTCCCCTCAGCCTCAGAACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGCA 590125 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | ||||||| ||||| || || || | ||||| |||||||||||| || Sbjct 590126 AGGGTACGGCCGTCCTCGAGCTGCTTCCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGA 590185 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | |||||| ||||| || ||| || || | | | | || || | ||| Sbjct 590186 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCAATCGTGTCTGATGACTCAACC 590245 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 |||| ||| ||||| || || || | || |||||||| |||||||| Sbjct 590246 TCGAGGGTGATGGTCTTCCCGGTGAGCGTCTTGACAAAGATTTGCAT 590292 >seq251 Length=123057 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| |||| ||||||||||| |||||||||||||| || | || | |||| || Sbjct 98299 CACCAGATGCAGAGTAGACTCCTTCTGAATATTGTAATCTGCAAGGGTGCGGCCGTCTTC 98358 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 ||||| || |||||| | || || | |||||||||| ||| | |||||| || || Sbjct 98359 GAGCTGCTTGCCCGCAAAGATGAGCCGCTGCTGATCCGGGGGAATGCCCTCCTTATC 98415 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || ||||| || || || |||||||| || | || | | ||||||||||| ||||| Sbjct 98540 GTGGACTCTTTCTGGATGTTGTAATCAGCAAGCGTGCGGCCATCCTCCAGCTGCTTACCA 98599 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | || || ||||||||||| ||| | |||||| ||||| || || || Sbjct 98600 GCAAAGATGAGCCTCTGCTGATCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 98659 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | ||| ||||| | ||| |||| ||| ||||| || || || | ||| Sbjct 98660 ACGTTGTCGATGGTATCTGATGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTC 98719 Query 19025 TTGACAAAAATTTGCAT 19041 |||||||| || ||||| Sbjct 98720 TTGACAAAGATCTGCAT 98736 >seq34 Length=3699824 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| || | ||| |||||| ||||| ||||| || || | || | ||||||| Sbjct 904605 CACCAGATGGAGAGTACTCTCCTTCTGAATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTC 904664 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || ||| | || || |||||||||||| || | ||| |||||||| Sbjct 904665 CAGCTGCTTCCCAGCAAATATCAGCCTCTGCTGATCCGGAGGGATGCCTTCTTTGTCCTG 904724 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTCCGTTTCGACGGTAATGGTTT 19010 ||||||| || || | ||| || || | || |||| || | ||| ||||| | Sbjct 904725 AATTTTCGCCTTCACATTATCGATCGTGTC-CGAGCTCTCCACCTCCAGGGTGATGGTCT 904783 Query 19011 TACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 | || || | || || ||||| |||||||| Sbjct 904784 TTCCGGTAAGGGTCTTTACAAATATTTGCAT 904814 >seq143 Length=574977 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| |||| ||||||||||| || ||||||||||| || | || | |||| || Sbjct 165600 CACCAGATGCAGAGTAGACTCCTTCTGGATATTGTAATCTGCAAGGGTGCGGCCGTCTTC 165659 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || |||||| | || || | |||||||||| ||| | |||||| || || Sbjct 165660 GAGCTGCTTGCCCGCAAAGATGAGCCGCTGCTGATCCGGGGGAATGCCCTCCTTATCTTG 165719 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||| || || | | | |||||| | ||| |||| ||| || || || Sbjct 165720 GATCTTCGCCTTCACATTATCAATAGTATCAGACGACTCGACCTCGAGGGTGATCGTCTT 165779 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || || | || || ||||| || |||||| Sbjct 165780 CCCAGTGAGGGTCTTCACAAAGATCTGCATT 165810 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || | ||| || || || | ||| | ||| || ||||| || || || ||||| || Sbjct 166039 CCACCCCTCAATCTCAAAACGAGGTGAAGCGTGGATTCCTTCTGGATGTTATAATCAGCG 166098 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | ||||||| ||||| || || || | || || ||||||||||| ||| Sbjct 166099 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGATCTGGGGGG 166158 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGG-CTCCGT 18993 | |||||| ||||| || || || || | | ||| ||||| | ||| ||| Sbjct 166159 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTATC-CGAGGACTCGAC 166217 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 |||| ||| ||||| || || |||| ||| ||||| || || ||||| Sbjct 166218 CTCGAGGGTGATGGTCTTGCCGGTTAGAGTCTTGACGAAGATCTGCAT 166265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414568272865024