Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq53 118 8e-22 >seq53 Length=1478458 Score = 118 bits (130), Expect = 8e-22 Identities = 155/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTA-ATTGACGCTCATCGT 43970 ||||||||| || |||||||| || ||||| |||||||| || | || || |||| | Sbjct 997870 CACCAAATGGAGAGTGCTCTCCTTCTGAATGTTATAATCAGCTAGAGTGCGGC-CATCTT 997812 Query 43971 CCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTG 44030 ||| ||| ||||| ||||| || | || ||||||||| | || | |||||| ||||| Sbjct 997811 CCAGTTGCTTTCCAGCAAAAATTAGCCTCTGCTGGTCCGGGGGAATACCTTCCTTATCCT 997752 Query 44031 AAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTT 44090 |||||| ||||| || ||| ||||| | |||||| || | || ||||| | Sbjct 997751 GAATTTTGGCCTTGACATTATCAATTGTATCCGAACTCTCCACCTCAAGAGTGATTGTCT 997692 Query 44091 TACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 | || || | ||||||||||| || |||||| Sbjct 997691 TGCCAGTAAGCGTCTTCACAAAGATCTGCATG 997660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354773725828608