Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq2 82.4 6e-11 >seq2 Length=5918456 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 ||||| || || || ||||| ||||| ||||| || ||| ||| |||| | |||||| Sbjct 561898 CACCAGGTGGAGGGTTGATTCCTTTTGGATGTTATAGTCGGCCAGAGTTCTGCCATCTTC 561839 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 ||| || ||||| ||| |||| | || ||| ||||| ||| | ||| || ||||| Sbjct 561838 CAACTGCTTGCCTGCAAAAATCAACCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTG 561779 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178 || || ||||| | | | | | ||| || || || | ||| || || || Sbjct 561778 GATCTTCGCCTTCACGTTGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATAGTCTT 561719 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| | || ||||| ||||||||||| Sbjct 561718 CCCGGTGAGGGTCTTGACGAAAATTTGCAT 561689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419582618107776