Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq59 98.7 9e-16 seq27 98.7 9e-16 seq2 82.4 7e-11 >seq59 Length=1347071 Score = 98.7 bits (108), Expect = 9e-16 Identities = 103/133 (77%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 13150 ACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAG 13209 ||| || ||||||||||| | |||||| || | | ||||| || || |||||||| || Sbjct 1070951 ACAAGCGAAATCACAGTGAAGTCCTTCGTCGCGAGAAATTAGTTCATTGGAAAATGTGAG 1071010 Query 13210 ACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCA-AACGAACCCGaaaaaa 13268 || ||||||||||| |||||||| | |||||| || || ||| ||||| || || || | Sbjct 1071011 GCCGGGCATAAGCCCGCGTTTTTTCAGCCAAAAGATCGC-GCAGAACGAGCCGGAGAAGA 1071069 Query 13269 aTATTCCTTCAAC 13281 | || ||||| || Sbjct 1071070 AGATGCCTTCCAC 1071082 >seq27 Length=2003651 Score = 98.7 bits (108), Expect = 9e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 13150 ACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAG 13209 ||| || ||||| ||||| | |||||| || | | ||||| |||||||||||||| || Sbjct 1228655 ACAAGCGAAATCGCAGTGAAGTCCTTCGTCGCGAGAAATTAGTTCGTTTGAAAATGTGAG 1228714 Query 13210 ACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaa 13269 || |||||||| || |||||||| | ||| || || ||| ||||| || || || || Sbjct 1228715 GCCGGGCATAAGACCACGTTTTTTCAGCCAGAAGATCGCACAGAACGAGCCGGAGAAGAA 1228774 Query 13270 TATTCCTTCAACTGCTGCAAACGC 13293 || ||||| || |||||||| Sbjct 1228775 GATGCCTTCTACGCAAGCAAACGC 1228798 >seq2 Length=5918456 Score = 82.4 bits (90), Expect = 7e-11 Identities = 101/133 (76%), Gaps = 4/133 (3%) Strand=Plus/Minus Query 13150 ACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAG 13209 ||| || ||||||||||| | |||| | || | | ||||| || || |||| ||| || Sbjct 905412 ACAAGCGAAATCACAGTGAAGTCCT-CGTCGCGAGAAATTAGTTCATTGGAAA-TGTGAG 905355 Query 13210 ACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCA-AACGAACCCGaaaaaa 13268 || ||||||||||| |||||||| | |||||| || || ||| ||||| || || || | Sbjct 905354 GCCGGGCATAAGCCCGCGTTTTTTCAGCCAAAAGATCGC-GCAGAACGAGCCGGAGAAGA 905296 Query 13269 aTATTCCTTCAAC 13281 | || ||||| || Sbjct 905295 AGATGCCTTCCAC 905283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430977693672192