Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq2 105 6e-18 seq53 104 2e-17 seq251 93.3 4e-14 seq143 89.7 4e-13 seq32 89.7 4e-13 seq34 86.0 5e-12 >seq2 Length=5918456 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||||||||||| ||||||||||| ||||| | | | ||||||| |||||| Sbjct 561435 TGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCAGCGAGGGTCCTCCCGTCCTCGAGCTGC 561376 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || || |||| | | |||||| ||| || | || ||||||||| ||| ||| Sbjct 561375 TTGCCAGCGAAAATCAGCCTCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGAATCTTC 561316 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| | | || || |||| |||||| ||||| || || || || |||||| Sbjct 561315 GCCTTCACGTTATCGATAGTGTCGGAAGACTCGACCTCGAGGGTAATAGTCTTCCCGGTG 561256 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || || || || ||||||||||| Sbjct 561255 AGGGTCTTGACGAAAATCTGCAT 561233 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/219 (70%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || || || ||||||||||| || ||||||||||| || | | || | ||||||| Sbjct 561213 ACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCGGCGAGTGTTCTCCCGTCCTCG 561154 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 |||||||| || || |||| | | ||||||||| || | | |||||||| | Sbjct 561153 AGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGA 561094 Query 48638 ATTTTCTGCTTGATAGACG-CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || || |||| | | | ||||| || | || || ||| | || ||||| || Sbjct 561093 ATCTT-GGCTTTTACGTTGTCGATGGTGTCCGAGGATTCAACCTCAAGGGTGATGGTCTT 561035 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCATCGTGTCTTG 48735 || ||||| || || ||||| ||||||||| |||| || Sbjct 561034 GCCAGTGAGGGTCTTGACAAAGATCTGCATC-TGTCGTG 560997 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| || |||||||| ||||||| || | || |||| |||||| || | || Sbjct 561651 TCCTTCTGGATGTTGTAGTCAGCCAGAGTTCTGCCATCTTCCAACTGCTTGCCTGCAAAA 561592 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || || |||||||||||| || | | |||||||||| || ||| ||| | Sbjct 561591 ATCAACCGCTGCTGATCCGGGGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTCACGTTA 561532 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 | || || |||| |||||| ||||| || || || || || ||||| || || || Sbjct 561531 TCGATAGTGTCGGAAGACTCGACCTCGAGGGTAATAGTCTTCCCAGTGAGGGTCTTGACG 561472 Query 48716 AAAATCTGCAT 48726 ||||||||||| Sbjct 561471 AAAATCTGCAT 561461 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 |||||||| ||||| || || |||| || | || |||| |||||| || | || Sbjct 561879 TCCTTTTGGATGTTATAGTCGGCCAGAGTTCTGCCATCTTCCAACTGCTTGCCTGCAAAA 561820 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAG 48653 || || |||||||||||| || | | ||||||||| || ||| ||| | | | Sbjct 561819 ATCAACCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTG 561760 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 || ||||| |||| |||||| ||||| || || || || |||||||| || || | Sbjct 561759 TCG--ATGGTGTCGGAAGACTCAACCTCGAGGGTGATAGTCTTCCCGGTGAGGGTCTTGA 561702 Query 48714 CAAAAATCTGCAT 48726 | ||||| ||||| Sbjct 561701 CGAAAATTTGCAT 561689 >seq53 Length=1478458 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCT 48575 ||| ||||| || ||||||||||| |||||||| |||||||| | | || || | || | Sbjct 997870 CACCAAATGGAGAGTGCTCTCCTTCTGAATGTTATAATCAGCTAGAGTG-CGGCCATCTT 997812 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||| ||||| || | |||||| | |||||| ||| || | || |||||| ||| Sbjct 997811 CCAGTTGCTTTCCAGCAAAAATTAGCCTCTGCTGGTCCGGGGGAATACCTTCCTTATCCT 997752 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 |||||| ||||| | | || ||||| | | |||| ||| | || || || | Sbjct 997751 GAATTTTGGCCTTGACATTATCAATTGTATCCGAACTCTCCACCTCAAGAGTGATTGTCT 997692 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || || || || |||||||| |||||||| Sbjct 997691 TGCCAGTAAGCGTCTTCACAAAGATCTGCAT 997661 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| | |||||| ||||||||||| || |||||||| || || | || ||||||| Sbjct 998098 CACCAGATGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCCGCGAGGGTGCGGCCGTCCTC 998039 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||||||| || | | || | | |||||| || || | | |||||||||| Sbjct 998038 CAGCTGCTTCCCCGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATCCCTTCCTTGTCCTG 997979 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 |||||| || | | | || ||||| | |||| ||| | || ||||| || Sbjct 997978 AATTTTAGCTTTAACATTATCGATCGTATCAGAGCTCTCCACCTCAAGGGTGATGGTCTT 997919 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || ||||||||||||||||| Sbjct 997918 TCCGGTAAGGGTCTTCACAAAAATCTGCAT 997889 Score = 87.8 bits (96), Expect = 2e-12 Identities = 165/233 (71%), Gaps = 10/233 (4%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || || ||||||| | ||| || || | ||| |||||| || ||||| |||||||| Sbjct 997659 CCACCACGCAACCGAAGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTATAATCAGC- 997601 Query 48560 AATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || || || ||||||||| ||||||||| | | || | | |||||| || || Sbjct 997600 AAGGGTACGGCCGTCCTCCAACTGCTTACCAGCAAATATCAGCCTCTGCTGGTCAGGGGG 997541 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTC- 48675 | || |||||||||| ||| || ||| | | | || || || |||| || ||| Sbjct 997540 AATACCTTCCTTGTCCTGAATCTTGGCCTTCACGTTGTCG--ATCGTGTCGG-AG-CTCT 997485 Query 48676 CGTCT-CGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || || | | ||||| || || ||||||||||| ||||| || ||||||||| Sbjct 997484 CGACTTCCAAGGTTATTGTCTTTCCGGTGAGAGTCTTCACGAAGATCTGCATC 997432 >seq251 Length=123057 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/206 (71%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 || || ||| ||| || || |||||||||||||| || || || | ||||||||||| Sbjct 98534 TGGAGGGTGGACTCTTTCTGGATGTTGTAATCAGC-AAGCGTGCGGCCATCCTCCAGCTG 98592 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 |||||| | | || | | ||||||||| || | | ||||||||| || || Sbjct 98593 CTTACCAGCAAAGATGAGCCTCTGCTGATCTGGGGGGATGCCCTCCTTGTCCTGGATCTT 98652 Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700 ||||| | | || |||||||| | ||||| ||||| || ||||| || ||| Sbjct 98653 GGCCTTGACGTTGTCG--ATGGTATCTGATGACTCGACCTCGAGGGTGATGGTCTTGCCG 98710 Query 48701 GTGAGAGTTTTCACAAAAATCTGCAT 48726 |||||||| || ||||| |||||||| Sbjct 98711 GTGAGAGTCTTGACAAAGATCTGCAT 98736 >seq143 Length=574977 Score = 89.7 bits (98), Expect = 4e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 ||| || || ||||||||||||| ||| || || | ||||||||||||||||| || Sbjct 165846 CTCTTTCTGGATGTTGTAATCAG-CAAGCGTGCGGCCATCCTCCAGCTGCTTACCAGCGA 165904 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | || | | ||||||||| ||| | || ||||| ||| || || ||||| Sbjct 165905 AGATGAGCCTCTGCTGATCTGGCGGGATACCCTCCTTATCCTGGATCTTGGCCTTGACGT 165964 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | || ||||| | ||||| ||||| || ||||| || ||||||||||| || | Sbjct 165965 TGTCAATAGTATCCGATGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGA 166024 Query 48714 CAAAAATCTGCAT 48726 | || |||||||| Sbjct 166025 CGAAGATCTGCAT 166037 >seq32 Length=1954954 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | || ||| | || | ||||| || |||||| || ||||||||||| | | Sbjct 590066 CCTCCCCTCAGCCTCAGAACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATC-GGC 590124 Query 48560 AATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || || || ||||||| |||||||| ||| || | || | | |||||||||| || Sbjct 590125 AAGGGTACGGCCGTCCTCGAGCTGCTTCCCGGCGAAGATAAGCCTCTGCTGATCCGGAGG 590184 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | ||||||||| || ||| ||||| | || || || | ||||| Sbjct 590185 AATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCAATCGTGTCTGATGACTCAAC 590244 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || ||||| || |||||||| || || ||||| || ||||| Sbjct 590245 CTCGAGGGTGATGGTCTTCCCGGTGAGCGTCTTGACAAAGATTTGCAT 590292 Score = 89.7 bits (98), Expect = 4e-13 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | || ||| | || | ||||| || |||||| || ||||||||||| | | Sbjct 590294 CCTCCCCTCAGCCTCAGAACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCG-C 590352 Query 48560 AATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || || || ||||||| |||||||| ||| || | || | | |||||||||| || Sbjct 590353 AAGGGTACGGCCGTCCTCGAGCTGCTTCCCGGCGAAGATAAGCCTCTGCTGATCCGGAGG 590412 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCC 48676 | | ||||||||| || ||| ||| | | | || || || || | ||||| Sbjct 590413 AATGCCCTCCTTGTCCTGGATCTTCGCCTTAACGTTGTCG--ATCGTGTCTGACGACTCA 590470 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||||| || ||||| || ||||||||||| || || || || |||||| Sbjct 590471 ACCTCGAGGGTGATGGTCTTCCCGGTGAGAGTCTTAACGAATATTTGCATC 590521 >seq34 Length=3699824 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| | ||| || || |||||||| ||||||||||| || | ||| || || |||||| Sbjct 904605 CACCAGATGGAGAGTACTCTCCTTCTGAATGTTGTAGTC-GGCAAGGGTGCGGCCGTCCT 904663 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| || | | || | | |||||||||| || | | ||| |||||| Sbjct 904664 CCAGCTGCTTCCCAGCAAATATCAGCCTCTGCTGATCCGGAGGGATGCCTTCTTTGTCCT 904723 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 ||||||| ||| | | | || || || | |||| ||| | || ||||| | Sbjct 904724 GAATTTTCGCCTTCACATTATCGATCGTGTCCGAGCTCTCCACCTCCAGGGTGATGGTCT 904783 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | ||||| || || || ||||| || ||||| Sbjct 904784 TTCCGGTAAGGGTCTTTACAAATATTTGCAT 904814 Score = 82.4 bits (90), Expect = 6e-11 Identities = 152/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTC 48573 ||||| | ||| || ||||||||||| || || ||||| || | ||| || || |||| Sbjct 905059 AACACCAGATGGAGAGTGCTCTCCTTCTGGATATTGTAGTC-GGCAAGGGTACGGCCGTC 905117 Query 48574 CTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTC 48633 |||| ||||||||| | |||| | | |||||| || || | || ||||||||| Sbjct 905118 TTCCAACTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTC 905177 Query 48634 CATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTC-CGTC-TCGACTGTTATG 48691 | ||| || ||| | | | ||||| || | || ||| || | || | || ||| Sbjct 905178 CTGAATCTTTGCCTTCACATTGTCAATGGTGTCAG-AG-CTCTCGACTTCCAAGGTGATG 905235 Query 48692 GTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || |||||||| ||||| || |||||||| Sbjct 905236 GTCTTCCCAGTGAGAGTCTTCACGAAGATCTGCAT 905270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421246599936896