Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq48 120 2e-22 seq16 120 2e-22 seq46 118 6e-22 seq57 114 7e-21 seq14 113 2e-20 seq41 111 8e-20 seq33 111 8e-20 seq19 111 8e-20 seq72 109 3e-19 seq112 105 3e-18 seq45 105 3e-18 seq131 104 1e-17 seq70 100 1e-16 seq5 100 1e-16 seq43 86.0 3e-12 >seq48 Length=1561281 Score = 120 bits (132), Expect = 2e-22 Identities = 84/95 (88%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 11435 AGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 |||| ||||||||| || ||||||||||| | | |||||||| ||||||||||||||| Sbjct 1294062 AGAAAAAATAAAAAA-CAGATTGGCCCATGTAGGTCTCGAACCTACGACCTTCGCGTTAT 1294004 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||| ||||||||||||||| |||| Sbjct 1294003 TAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 1293969 >seq16 Length=2679763 Score = 120 bits (132), Expect = 2e-22 Identities = 84/95 (88%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 11435 AGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 |||| ||||||||| || ||||||||||| | | |||||||| ||||||||||||||| Sbjct 1799982 AGAAAAAATAAAAAA-CAGATTGGCCCATGTAGGTCTCGAACCTACGACCTTCGCGTTAT 1799924 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||| ||||||||||||||| |||| Sbjct 1799923 TAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 1799889 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1042263 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1042322 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 1042323 TGAGCTAATAGGCC 1042336 >seq46 Length=1670317 Score = 118 bits (130), Expect = 6e-22 Identities = 83/94 (88%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 11437 AATTAATAAAAAAT-CAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATT 11495 |||||| |||||| || |||||||||| ||| |||||| | |||||||||||||||| Sbjct 481624 AATTAAAAAAAAACACATTTTGGCCCATGCAAGTCTCGAACTTGCGACCTTCGCGTTATT 481683 Query 11496 AGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||| |||||||||||||||||||| Sbjct 481684 AGCACGACGCTCTAACCAACTGAGCTAATGGGCC 481717 >seq57 Length=1440427 Score = 114 bits (126), Expect = 7e-21 Identities = 80/89 (90%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||||| ||||| |||||||| | | |||||||| ||||||||||||||||||||| Sbjct 981472 AATAAAAAA-CAAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 981415 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 981414 GACGCTCTAACCAACTGAGCTAATAGGCC 981386 Score = 113 bits (124), Expect = 2e-20 Identities = 75/84 (89%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 |||| |||| ||||||||| | | |||||||| |||||||||||||||||||||||||| Sbjct 1048494 AAAAACAAAATGGCCCATGGAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 1048553 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||||||||||| |||| Sbjct 1048554 TCTAACCAACTGAGCTAATAGGCC 1048577 >seq14 Length=2986515 Score = 113 bits (124), Expect = 2e-20 Identities = 90/109 (83%), Gaps = 5/109 (5%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAA-----TCAAATTGGCCCATGAAAGGATCGAACCTTCGAC 11483 ||| ||| | ||||||||||| | || ||||||||| | | |||||||| |||| Sbjct 408981 AAAAATAAACTTAATAAAAAACTGTATTTAACTGGCCCATGTAGGTCTCGAACCTACGAC 408922 Query 11484 CTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGTC 11532 ||||||||||||||||||||||||| ||||||||||||||| |||| || Sbjct 408921 CTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCCATC 408873 >seq41 Length=1768129 Score = 111 bits (122), Expect = 8e-20 Identities = 79/90 (88%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 11443 TAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 |||||||| | | ||||||||| | | |||||||| |||||||||||||||||||||| Sbjct 1572509 TAAAAAATGACACGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACG 1572450 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 ||||||| ||||||||||||||| |||||| Sbjct 1572449 ACGCTCTAACCAACTGAGCTAATAGGCCGT 1572420 >seq33 Length=2016512 Score = 111 bits (122), Expect = 8e-20 Identities = 78/90 (87%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||| || | ||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 245815 TAAAATGTCGACGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 245756 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCCGTC 11532 |||||| ||||||||||||||| ||||||| Sbjct 245755 CGCTCTAACCAACTGAGCTAATAGGCCGTC 245726 >seq19 Length=2344052 Score = 111 bits (122), Expect = 8e-20 Identities = 78/90 (87%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||| || | ||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 60330 TAAAATGTCGACGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 60389 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCCGTC 11532 |||||| ||||||||||||||| ||||||| Sbjct 60390 CGCTCTAACCAACTGAGCTAATAGGCCGTC 60419 >seq72 Length=1168296 Score = 109 bits (120), Expect = 3e-19 Identities = 77/89 (87%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || || ||| || |||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 800835 AAGAAGAAAACACGTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 800894 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 800895 GACGCTCTAACCAACTGAGCTAATAGGCC 800923 >seq112 Length=727685 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 71745 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 71686 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 71685 CTGAGCTAATAGGCC 71671 >seq45 Length=1717576 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 208797 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 208738 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 208737 CTGAGCTAATAGGCC 208723 >seq131 Length=538547 Score = 104 bits (114), Expect = 1e-17 Identities = 79/93 (85%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 11439 TTAATAAAAAATCAAA--TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||| ||||||| || ||||||||| | | |||||||| |||||||||||||||| Sbjct 123831 TTAAAAAAAAATGAATAGTTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTA 123772 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| ||||||||||||||| |||| Sbjct 123771 GCACGACGCTCTAACCAACTGAGCTAATAGGCC 123739 Score = 104 bits (114), Expect = 1e-17 Identities = 77/91 (85%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||| || || |||||||||||| | | |||||||| |||||||||||||||||| Sbjct 124177 TTAAAAATAACAAAAATTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGC 124118 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| ||||||||||||||| |||| Sbjct 124117 ACGACGCTCTAACCAACTGAGCTAATAGGCC 124087 >seq70 Length=1215233 Score = 100 bits (110), Expect = 1e-16 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 |||||||||| | | |||||||| |||||||||||||||||||||||||||| |||| Sbjct 516813 ATTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCA 516872 Query 11514 ACTGAGCTAATGGGCCGTC 11532 ||||||||||| |||| || Sbjct 516873 ACTGAGCTAATAGGCCATC 516891 >seq5 Length=4049515 Score = 100 bits (110), Expect = 1e-16 Identities = 79/93 (85%), Gaps = 3/93 (3%) Strand=Plus/Plus Query 11439 TTAATAAAAAATCAAA--TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||| ||||||| || ||||||||| | | |||||||| |||||||||||||||| Sbjct 319456 TTAA-AAAAAATGAATAGTTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTA 319514 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| ||||||||||||||| |||| Sbjct 319515 GCACGACGCTCTAACCAACTGAGCTAATAGGCC 319547 Score = 96.9 bits (106), Expect = 2e-15 Identities = 78/93 (84%), Gaps = 3/93 (3%) Strand=Plus/Plus Query 11439 TTAATAAAAAATCAAATTGG--CCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||| || || ||||||| ||||| | || |||||||| |||||||||||||||| Sbjct 319108 TTAAAAATAACAAAAATTGGGGCCCAT-ACAGTCTCGAACCTGTGACCTTCGCGTTATTA 319166 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| ||||||||||||||| |||| Sbjct 319167 GCACGACGCTCTAACCAACTGAGCTAATAGGCC 319199 >seq43 Length=1752904 Score = 86.0 bits (94), Expect = 3e-12 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGA-TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || ||||||||| | | |||||||| |||||||||||||||||| ||||||||| || Sbjct 1549722 AAATGGCCCATGTAGGTCCTCGAACCTATGACCTTCGCGTTATTAGCTCGACGCTCTAAC 1549781 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||| ||||| |||| Sbjct 1549782 CAACTGAACTAATAGGCC 1549799 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261488344516096