Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq39 149 1e-31 seq3 149 1e-31 seq41 145 1e-30 seq8 145 1e-30 seq45 132 8e-27 seq37 114 2e-21 >seq39 Length=1776819 Score = 149 bits (164), Expect = 1e-31 Identities = 189/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | | ||| || || ||||||||||||||||| ||||| || ||| Sbjct 650930 GCGAAGCGTCACCGGAAAGTTCTCCGCGACAACATCCAAGGAATCACGAAGCCGGCGATC 650871 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||||||||| ||||| || || ||||| || || || |||| || |||| Sbjct 650870 CGGCGTCTGGCTCGCCGTGGCGGCGTGAAGCGCATCAGCGGTCTGATCTACGAGGAGACA 650811 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || | ||||||||||| ||| ||| || | ||||||| | || || ||| Sbjct 650810 CGTGGCGTGCTCAAGATCTTCCTGGAGAACGTGATTCGTGATGCTGTGACATACACTGAG 650751 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| | | ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 650750 CACGCGAGGAGGAAGACAGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGT 650691 Query 16673 CGTAAGATTTATGGTTTTGG 16692 |||| | || || ||||| Sbjct 650690 CGTACCCTATACGGCTTTGG 650671 >seq3 Length=5632934 Score = 149 bits (164), Expect = 1e-31 Identities = 189/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || || | | ||| || || |||||||| || ||||| |||||||| ||| Sbjct 1053429 GCGAAGCGCCACCGGAAAGTTCTCCGCGACAACATCCAGGGGATCACGAAGCCAGCAATC 1053370 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || |||||||| || || || || ||||| || ||||||| |||| || || | Sbjct 1053369 CGGCGGCTGGCTCGCCGCGGCGGTGTGAAGCGCATCAGTGGATTGATCTACGAGGAAACA 1053310 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || | ||||||||||| ||| || || | |||||| || || |||||| Sbjct 1053309 CGTGGCGTGCTCAAGATCTTCCTGGAGAATGTGATTCGTGATGCCGTCACTTACACCGAG 1053250 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| | | ||||||||||| |||||||| | ||||| || | || || || ||| Sbjct 1053249 CACGCGAGGAGGAAGACTGTCACTGCCATGGATGTTGTCTACGCGCTCAAGCGCCAGGGC 1053190 Query 16673 CGTAAGATTTATGGTTTTGG 16692 |||| | || || ||||| Sbjct 1053189 CGTACCCTGTACGGCTTTGG 1053170 >seq41 Length=1768129 Score = 145 bits (160), Expect = 1e-30 Identities = 188/260 (72%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| | |||||| ||||||||||| || ||||| || || || ||| Sbjct 1082224 GCCAAGCGCCACCGCAAAGTTCTTCGCGATAACATCCAGGGGATCACAAAACCGGCGATC 1082165 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||||||||| || || || ||||| |||||| | || || |||| || || | | Sbjct 1082164 CGTCGTCTGGCGCGGCGCGGGGGAGTGAAGCGTATTAGCGGTCTGATCTACGAGGAAACT 1082105 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| |||||||||| | ||| || |||| ||||| | ||||| || Sbjct 1082104 CGCGGCGTTCTGAAGATCTTTTTGGAGAATGTGATCCGCGATGCGGTGACGTATACGGAA 1082045 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || ||| || || ||||||||| |||||||| | ||||| ||| | || || || ||| Sbjct 1082044 CATGCTCGCCGCAAAACTGTCACCGCCATGGATGTTGTCTACGCACTCAAGCGCCAGGGC 1081985 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | || |||||||| Sbjct 1081984 CGCACTCTCTACGGTTTTGG 1081965 Score = 134 bits (148), Expect = 2e-27 Identities = 186/258 (72%), Gaps = 2/258 (1%) Strand=Plus/Plus Query 16436 AAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCG 16494 || || ||||||| | || || || || ||||||||||| ||||| ||||| || ||||| Sbjct 806453 AAACGCCATCGCAAGGTC-CTCCGCGACAACATCCAAGGCATCACTAAGCCGGCGATCCG 806511 Query 16495 TCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCG 16554 || ||||| || || || || || ||||| || || ||| |||| || |||| || Sbjct 806512 ACGGCTGGCGCGCCGCGGCGGCGTGAAGCGGATCAGCGGTTTGATCTACGAGGAGACCCG 806571 Query 16555 TGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCA 16614 || ||| | |||||||| || | | ||| |||| |||||| || ||| |||||||| Sbjct 806572 TGGTGTGCTCAAGATCTTTCTTGAAAACGTCATCCGCGATGCTGTCACCTACACCGAGCA 806631 Query 16615 CGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| | | |||||||| || |||||||| | || ||||| | || || || || | Sbjct 806632 CGCGAGGAGGAAGACTGTTACTGCCATGGATGTTGTTTATGCGCTCAAGCGCCAGGGAAG 806691 Query 16675 TAAGATTTATGGTTTTGG 16692 | | ||||| ||||| Sbjct 806692 AACCCTCTATGGATTTGG 806709 >seq8 Length=3569224 Score = 145 bits (160), Expect = 1e-30 Identities = 188/260 (72%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || || | | ||| || || |||||||| || ||||| ||||| || ||| Sbjct 2177357 GCCAAGCGCCACCGGAAAGTTCTCCGCGACAACATCCAGGGGATCACGAAGCCGGCAATC 2177298 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||||||||| ||||| || || ||||| || || || |||| || |||| Sbjct 2177297 CGGCGTCTGGCTCGCCGTGGCGGCGTGAAGCGAATCAGCGGGCTGATCTACGAGGAGACA 2177238 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || | ||||| || || ||| ||| |||| |||||| | ||| || ||| Sbjct 2177237 CGTGGCGTGCTTAAGATATTTCTGGAGAACGTGATCCGTGATGCGGTGACCTACACTGAG 2177178 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || |||||||||||| ||||||| | ||||| || | || || || || Sbjct 2177177 CACGCTCGCCGGAAGACTGTCACCGCCATGGACGTTGTCTACGCGCTCAAGCGCCAGGGT 2177118 Query 16673 CGTAAGATTTATGGTTTTGG 16692 |||| |||| || ||||| Sbjct 2177117 CGTACTCTTTACGGCTTTGG 2177098 >seq45 Length=1717576 Score = 132 bits (146), Expect = 8e-27 Identities = 189/266 (71%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||||| | | ||||| || || ||||| || ||||| ||||| || || Sbjct 256746 CGCTAAGCGTCATCGTAAAGTACTTCGCGACAATATCCAGGGCATCACGAAGCCGGCGAT 256805 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| | || || || || || ||||| ||||| || || | |||| || || | Sbjct 256806 CCGGAGGCTTGCGCGGCGCGGGGGAGTGAAGCGCATCAGCGGTCTAATCTACGAGGAAAC 256865 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | |||| |||||||||| || ||| || || | || || | || ||||| Sbjct 256866 TCGAGGTGTTCTGAAGATCTTTCTTGAGAATGTGATTCGCGACGCCGTGACGTACACCGA 256925 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || || ||||| |||||| |||||||| | ||||| ||| | || |||||||| Sbjct 256926 GCATGCGCGCCGCAAGACGGTCACCGCCATGGATGTTGTCTACGCACTCAAGCGTCAAGG 256985 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTT 16697 ||| | | || || |||||| ||| Sbjct 256986 CCGCACTCTCTACGGCTTTGGAGGTT 257011 Score = 127 bits (140), Expect = 3e-25 Identities = 191/269 (71%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| | || || || || ||||||||||| || || ||||| || || Sbjct 393690 GCGAAGCGCCACCGCAAGGTC-CTCCGCGACAACATCCAAGGCATTACGAAGCCGGCGAT 393632 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| ||||| ||||| |||||| | || || ||| |||| || |||| Sbjct 393631 CCGACGGCTGGCACGTCGCGGTGGCGTCAAGAGGATCAGCGGGTTGATCTACGAGGAGAC 393572 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | |||||||| || ||| ||| |||| || || | || ||||| Sbjct 393571 ACGCGGTGTGCTCAAGATCTTTCTGGAGAACGTGATCCGCGACGCCGTGACGTACACCGA 393512 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| | | |||||||| ||| ||||||| | |||||||| | || || || || Sbjct 393511 GCACGCGAGGAGGAAGACTGTTACCGCCATGGACGTTGTCTATGCGCTCAAGCGCCAGGG 393452 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | | | || ||||| || ||| || Sbjct 393451 AAGAACGCTGTACGGTTTCGGCGGTTGAT 393423 >seq37 Length=1812464 Score = 114 bits (126), Expect = 2e-21 Identities = 189/270 (70%), Gaps = 2/270 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| || || | | || ||||| ||||||||||| ||||| || ||||| || | Sbjct 998814 CGCTAAGCGCCACCGGAAGGTC-CTTCGTGATAACATCCAGGGAATAACAAAGCCTGCGA 998872 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| ||||| || || || || ||||| || || | |||| || |||| Sbjct 998873 TCCGCCGTCTCGCTCGCCGCGGCGGCGTGAAGCGCATCAGCGGCCTCATCTACGAGGAGA 998932 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | |||||||| || ||| ||| || | || || | ||||||| Sbjct 998933 CACGCGGCGTACTCAAGATCTTTCTGGAGAACGTCATTCGCGACGCGGTGACATATACCG 998992 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||||||| || ||||| || || | ||||| ||||||| || | || || || | Sbjct 998993 AGCACGCTCGCCGGAAGACGGTTACAGCGATGGACGTCGTCTACGCGCTCAAGCGCCAGG 999052 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 |||| | | ||||| || || ||| || Sbjct 999053 GCCGAACACTCTATGGGTTCGGCGGTTGAT 999082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074380780928