Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq321 504 9e-138 seq8 104 3e-17 >seq321 Length=132638 Score = 504 bits (558), Expect = 9e-138 Identities = 494/634 (78%), Gaps = 5/634 (1%) Strand=Plus/Minus Query 135555 TCATC-TCTGGTGCTGTTATCCCTTCTA--GCAACGCCATCGGCCTTCACTTCTATCCCA 135611 ||||| |||||||| |||| ||| || ||| || || || | || ||||| || | Sbjct 87052 TCATCCTCTGGTGCGATTATTCCTACTTCTGCA--GCTATAGGTTTGCATTTCTACCCGA 86995 Query 135612 TCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAACTAGTGG 135671 |||||||||| || ||| ||||||||||| |||| ||||| ||||||||| ||||| | | Sbjct 86994 TCTGGGAAGCAGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAACTAATTG 86935 Query 135672 TCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACTCTCTTACC 135731 | | |||||| | | ||||| | |||||||||||| ||||||||||| || || Sbjct 86934 TTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCC 86875 Query 135732 GACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTACTG 135791 | ||||||||||| ||||||||| ||| || || ||||| |||||||| |||||||||| Sbjct 86874 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 86815 Query 135792 CTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCGCTTGGCA 135851 |||||||| || ||||||| | || ||||| ||| |||||||||||| | || | Sbjct 86814 CTGTTTTCTTGATCTACCCTATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTTTAGGAA 86755 Query 135852 TTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACAACATTCTCATGCATC 135911 | || || ||||| |||| |||| |||| |||||||| || |||||||| || ||||||| Sbjct 86754 TATCAGGTACTTTCAACTTCATGATTGTATTCCAGGCGGAGCACAACATCCTTATGCATC 86695 Query 135912 CTTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTCTGCTATGCATG 135971 | ||||||||||| ||||| ||||| || ||||| ||||| || ||| ||||||||||| Sbjct 86694 CATTCCACATGTTAGGAGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 86635 Query 135972 GATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTGAGGTAGAATCCCAGAACTATG 136031 | || | || ||||||||| | | | || || || || ||||| || | | Sbjct 86634 GTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAACGAATCTGCTAATGAAG 86575 Query 136032 GTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTTCG 136091 |||||| ||||||||||| ||||| |||||||| || || |||||||||||||| || | Sbjct 86574 GTTACAGATTCGGTCAAGAGGAAGAAACTTACAATATCGTAGCTGCTCATGGTTATTTTG 86515 Query 136092 GTCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCTTG 136151 | || |||||||||||||||| ||||||||||||||||| |||||||| || | | Sbjct 86514 GCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCCCTACACTTCTTTTTGG 86455 Query 136152 CTGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGC 136185 ||||||||||||| || ||||||||||| |||| Sbjct 86454 CTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGC 86421 >seq8 Length=3569224 Score = 104 bits (114), Expect = 3e-17 Identities = 163/230 (71%), Gaps = 14/230 (6%) Strand=Plus/Plus Query 135905 ATGCATCCTTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTCTGCT 135964 |||||||| ||||||||||| ||||| ||| || ||| || || ||| |||| Sbjct 2145667 ATGCATCCATTCCACATGTTAGGAGTAGCTAATGTATTC------TCCCTATTCAGTGCT 2145720 Query 135965 ATGCATGGATCTCTT-GTCACCTCTAGTCTTGTACGTGAGACGACTGAGGTAGAATCCCA 136023 |||||| ||| |||| || ||||||||| || | | | ||| || ||||| Sbjct 2145721 ATGCAT-GATTTCTTGGTAACCTCTAGTTTTATCAAGAAAATGACAGAAAATGAATCTGC 2145779 Query 136024 GAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTG-----CTGCT 136078 || | ||||| | || |||||||| ||||| |||||||| || || | ||||| Sbjct 2145780 TAATGAAGGTTATAGATTTGGTCAAGAGGAAGAAACTTACAATATCGTAGCTGCTCTGCT 2145839 Query 136079 CATGGTTACTTCGGTCGTCTGATCTTCCAATATGCGTCGTTCAACAACTC 136128 ||||||| ||| | || ||||||| |||||||| ||||||||||| Sbjct 2145840 CATGGTT-GTTCAGCCGATTGATCTTTCAATATGCTAGTTTCAACAACTC 2145888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627960966758400