Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq321 349 1e-91 >seq321 Length=132638 Score = 349 bits (386), Expect = 1e-91 Identities = 434/592 (73%), Gaps = 2/592 (0%) Strand=Plus/Minus Query 19503 GCAATAGGACTGCACTTTTATCCGATCTGGGAAGCCGGCACTTTAGATGAGTGGTTATAC 19562 || ||||| |||| || || |||||||||||||| | || | ||||||||||||||| Sbjct 87019 GCTATAGGTTTGCATTTCTACCCGATCTGGGAAGCAGCATCTGTTGATGAGTGGTTATAC 86960 Query 19563 AACGGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTAATAGGAGTAGCAGCATACGCT 19622 || |||||||| ||| |||| |||| | ||||||||| | || ||||| ||| Sbjct 86959 AATGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATG 86900 Query 19623 GGTAGACAGTGGGAACTATCTTACAGATTAGGAATGAGACCATGGATATTCGTAGCATAT 19682 ||| | |||||||||| || | | | || ||| | || ||||| || |||||| Sbjct 86899 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATAT 86840 Query 19683 ACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCGTT-TACCCATTTGGGCAAGGGAG 19741 |||| || | |||| ||| |||||| ||||| | | ||||| | || ||||| || Sbjct 86839 TCAGCTCCTGTTGCAGCTGCTACTGCTGT-TTTCTTGATCTACCCTATCGGTCAAGGAAG 86781 Query 19742 TTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCA 19801 |||| ||||||||||||| | || || || |||||||| ||||| ||| | |||||||| Sbjct 86780 TTTTTCTGATGGTATGCCTTTAGGAATATCAGGTACTTTCAACTTCATGATTGTATTCCA 86721 Query 19802 AGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGG 19861 || || ||||| |||||||||||||| ||||||||| | || || ||||| |||||||| Sbjct 86720 GGCGGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGAGTAGCTGGTGTATTCGG 86661 Query 19862 TGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTCCTCGATCATCAAGGAAAC 19921 || || || ||| ||||||||| || ||||| || || | |||| |||||| Sbjct 86660 CGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAAC 86601 Query 19922 AACTGAGGATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAGAGACATATAA 19981 || || | | ||| || | || || | ||||| ||||| ||||| || || || Sbjct 86600 CACAGAAAACGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTACAA 86541 Query 19982 TATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATATGCTTCTTTCAATAA 20041 ||| || ||||| || || || ||||| ||||||| || ||||||||| |||||| || Sbjct 86540 TATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAA 86481 Query 20042 TTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCATATGG 20093 |||||||| |||| |||||| | ||| ||| || || || || || ||| Sbjct 86480 CTCTCGTTCCCTACACTTCTTTTTGGCTGCTTGGCCTGTAGTAGGTATCTGG 86429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144440063141376