Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq321 342 8e-89 >seq321 Length=132638 Score = 342 bits (378), Expect = 8e-89 Identities = 461/641 (72%), Gaps = 1/641 (0%) Strand=Plus/Minus Query 211751 TCATC-TCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTATCCTATC 211809 ||||| |||||||| || |||| |||| || || ||||| || ||||| || ||| Sbjct 87052 TCATCCTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTCTACCCGATC 86993 Query 211810 TGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTACCAGTTGGTAATC 211869 |||||||||||| || ||||||||||| | |||||||| |||||||| | | | | Sbjct 86992 TGGGAAGCAGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAACTAATTGTT 86933 Query 211870 TTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAGTGGGAACTTTCATACCGT 211929 | |||||| | | || | | |||||||| | ||||||||||| | |||| Sbjct 86932 CTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGT 86873 Query 211930 TTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCTTTCGCT 211989 | ||||||||||||||||| |||||| |||||||| ||||| |||| ||| ||| Sbjct 86872 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCT 86813 Query 211990 GTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTATA 212049 || ||| | | ||||| ||||||| || || || || |||||||||||||| ||| Sbjct 86812 GTTTTCTTGATCTACCCTATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTTTAGGAATA 86753 Query 212050 TCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCACCCA 212109 ||||| || |||||||||||| | |||||||| || || || |||||||||||||| ||| Sbjct 86752 TCAGGTACTTTCAACTTCATGATTGTATTCCAGGCGGAGCACAACATCCTTATGCATCCA 86693 Query 212110 TTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCACGGT 212169 ||||| ||| ||| || || ||| | ||||| || | ||||| ||||||||| ||| Sbjct 86692 TTCCACATGTTAGGAGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGT 86633 Query 212170 TCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTAGATTCACAGAACTATGGT 212229 || | || || ||| | ||| | |||||||| | || || || | ||| Sbjct 86632 TCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAACGAATCTGCTAATGAAGGT 86573 Query 212230 TACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTCGGT 212289 |||| ||||| ||||| ||||| || || || ||||| ||||| ||||| || || || Sbjct 86572 TACAGATTCGGTCAAGAGGAAGAAACTTACAATATCGTAGCTGCTCATGGTTATTTTGGC 86513 Query 212290 AGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTCGCA 212349 || | |||||||| ||||| ||||||||| | |||||||||| | || Sbjct 86512 CGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCCCTACACTTCTTTTTGGCT 86453 Query 212350 TCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTAT 212390 | |||||||| | || | ||||| || || | ||||| Sbjct 86452 GCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTAT 86412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807546155381760