Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2 163 4e-35 seq27 140 4e-28 seq9 118 1e-21 >seq2 Length=5918456 Score = 163 bits (180), Expect = 4e-35 Identities = 428/642 (67%), Gaps = 26/642 (4%) Strand=Plus/Minus Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072 || ||||| || || || | || ||||| ||||| || || || | ||| || || Sbjct 905701 TTCTGGTAGTCTCCTACTCTCTTCTCGAAGAAATTTGTCTTCCCCTGCAACGAAATCAAC 905642 Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 33132 ||||| ||||||||||||| | || ||||||||||| || |||| | || ||| Sbjct 905641 TCCATCCAATCAAACGGATTAGCGACGTTATAAATTTTGCTATATCCGAGAGCAACGATC 905582 Query 33133 AATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 33192 |||| ||| || |||||||| ||||| |||||| |||| |||||||| | | Sbjct 905581 AATCGATCAGCTACGAATTCGATATACTGACTCATCAGATCACTGTTCATTCCGACCA-A 905523 Query 33193 TTAACTGGAAGAGC--CGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAA 33250 || | || || |||| | |||||| | || || || || || | || | Sbjct 905522 CGCACACGGAGTGCATTGCAG--ATGAATTCTCGCTCGATATCCACTGCGTCGGATACGA 905465 Query 33251 TAGATCTAACGGTTTCTTCACTCGG--TG-GATGCAATAAA-TGTTTAAACATCAAACAT 33306 | ||||||||| |||||| | | || | || ||| ||| ||| ||||| Sbjct 905464 TCGATCTAACGTGTTCTTCGGTAAGCTTGTTCTTCAGCAAACTGT----ACAATAAACAA 905409 Query 33307 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCG 33366 |||||||| ||||| || ||||||| | | ||||||||| |||| ||| ||||| ||| Sbjct 905408 GCGAAATCACAGTGAAG-TCCTCGTCGCGAGAAATTAGTTCATTGG-AAATGTGAGGCCG 905351 Query 33367 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATT 33426 ||||| || || || ||||| |||||||| || | ||| || || || |||||||| Sbjct 905350 GGCATAAGCCCGCGTTTTTTCAGCCAAAAGATCGCGCAGAACGAGCCGGAGAAGAAGATG 905291 Query 33427 CCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA-------CCGGCGCTGTCATG 33479 ||||| || |||||| || | || | || | || | || | ||| Sbjct 905290 CCTTCCACGCAAGCAAAAGCGACGAGACGATCCGCGAAAGAAGAATCACACGAT-TCA-- 905234 Query 33480 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33539 ||||||| | ||||| | ||| || ||||| || | || || || || Sbjct 905233 -ATCCACTCGAGCGCCCACTTGGCTTTACGGGCGACACACGGGACAGTGTCGATCGCGCG 905175 Query 33540 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33599 |||||| || || | |||||| | |||||| || | | |||||| ||||| Sbjct 905174 GAAGAGACGTGCCTTCTCGTCGGAATCTTTGATATAAGTTTCTAATAGAAGACTGTACAT 905115 Query 33600 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 33641 ||| || || ||||| |||||||| ||||| || |||||||| Sbjct 905114 TTCTGAGTGTATGTTCTCAATGGCGATCTGGAAACCGTAGAA 905073 >seq27 Length=2003651 Score = 140 bits (154), Expect = 4e-28 Identities = 299/441 (68%), Gaps = 12/441 (3%) Strand=Plus/Plus Query 33012 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33071 ||| ||||| ||||| || | || ||||| |||||||| || || | || || || Sbjct 1228364 TTTCTGGTACTCACCTACTCTCTTCTCGAAGAAATTAGTCTTACCCTGCAGCGAGATTAA 1228423 Query 33072 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 33131 ||||| |||| |||||||| |||||| |||||||| | | || | | | Sbjct 1228424 CTCCATCCAATCGAACGGATTCACAACATTGTAAATTTTGTGATGACCGAGAGCGCCGAG 1228483 Query 33132 CAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 33191 ||||| ||| || |||||||| ||||| |||| | || | |||||||| | | Sbjct 1228484 CAATCGATCAGCAACGAATTCGATATACTGGCTCATTAAATCGCTGTTCATTCCGACCAA 1228543 Query 33192 TTTAACTGGAAGAGCC--GCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATA 33249 ||| || || |||| | ||||| | || || || || || ||| Sbjct 1228544 CGCGCATGGGAGCGCGTTGCAG--ATGAATTCCCGCTCTATATCCACTGCGTCGATTACG 1228601 Query 33250 ATAGATCTAACGGTTTCTTCACTCGG--TG-GATGCAATAAA-TGTTTAAACATCAAACA 33305 || |||| ||| |||||| | || ||| | ||| ||| ||| ||||| Sbjct 1228602 ATCGATCGAACTTGTTCTTCGGAAAGCTTGTGATTTAGAAAACTGTATAAT----AAACA 1228657 Query 33306 TGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCC 33365 |||||||||||||| || || ||||| | | |||||||||||| ||||| ||||| || Sbjct 1228658 AGCGAAATCGCAGTGAAGTCCTTCGTCGCGAGAAATTAGTTCGTTTGAAAATGTGAGGCC 1228717 Query 33366 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGAT 33425 |||||| || ||||| ||||| ||||| || || | | ||| || || || |||||||| Sbjct 1228718 GGGCATAAGACCACGTTTTTTCAGCCAGAAGATCGCACAGAACGAGCCGGAGAAGAAGAT 1228777 Query 33426 TCCTTCTACTGCAGCAAAGGC 33446 |||||||| |||||| || Sbjct 1228778 GCCTTCTACGCAAGCAAACGC 1228798 >seq9 Length=4860633 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670 ||| || ||||| || |||||||| ||||| || |||||||| | ||| | | || Sbjct 1349991 AGTGCCAGCATTGAACAAGGTAGGCGAAGCATGAGTAAACCAGCGCTGAGACATCAAATG 1350050 Query 63671 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63729 ||| || | ||| | || || ||||| | ||| |||| ||| || || || ||||||| Sbjct 1350051 GTATGTTTTAATGACCGACTCAATATCATCCTTG-TGAACTCCCACAGCTACTCGCATTA 1350109 Query 63730 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63789 ||||||||| ||||||||||| | |||| | ||||| | || || | |||| Sbjct 1350110 GCATGTGCTGCGGTCTTTCAACCACCTTGCCAGACACCTTCAAGAGATACGACCTCTCCA 1350169 Query 63790 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 |||| ||||||||||| |||| || |||||| || ||||| || || Sbjct 1350170 AAGTCTTAAAACCAAAGTAGTCATAATCAAAGTCGCGGTCGTATATTAT 1350218 Score = 109 bits (120), Expect = 7e-19 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 |||||| ||||| | ||||| || |||| ||| | || | |||||| || | ||| || Sbjct 1349671 TCCTCCTTGATCAACGTATCGGGCAGTGTCGTTAAACACCCGCAACATCGGCACAATCCC 1349730 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 ||||| | ||||| ||||| |||||||| ||| | |||||||||||| || || Sbjct 1349731 ATTTGAAGTTCCATTTGTACCACGAATATAGCTACCAGTTGCACGAATATTATGAACAGA 1349790 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 | ||| |||||||| || |||| || | || ||| ||||| || ||||| || Sbjct 1349791 AACACCAATTCCCCCAGCAGATTTACTTATAACAGCACATTCCTTTAAAGTATCATAAAT 1349850 Query 63551 ACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63593 || || || || || || ||||| || || ||||||||| Sbjct 1349851 TCCTTCAATACTGTCTTCTTTCATGCAAATCAGGAAACAGCTA 1349893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622940222991360