Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31]
896 sequences; 295,462,401 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq53 98.7 1e-15
seq27 82.4 7e-11
>seq53
Length=1478458
Score = 98.7 bits (108), Expect = 1e-15
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
|||||| | || || ||||| | || || || | |||||| |||| | ||
Sbjct 997205 ATGCAAATCTTCGTGAAAACTCTGACAGGGAAGACCATCACCCTCGAGGTCGAGAGCTCT 997264
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
||||| || || | || ||| |||||| ||||| || || || ||||| || ||
Sbjct 997265 GACACTATTGACAATGTAAAAGCTAAGATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 997324
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947
||||||||||||| || ||| || || ||||| |||| |||| | | ||| || || ||
Sbjct 997325 CAAAGACTCATTTTCGCCGGGAAGCAGCTCGAGGATGGCAGAACCCT-AGCTGATTACAA 997383
Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995
||| || || || |||||| | |||||||| || ||||| | || ||
Sbjct 997384 CATCCAGAAGGAGTCTACTCTTCATCTGGTGCTACGACTTCGCGGTGG 997431
>seq27
Length=2003651
Score = 82.4 bits (90), Expect = 7e-11
Identities = 133/186 (72%), Gaps = 18/186 (10%)
Strand=Plus/Plus
Query 119929 TGTAGTATAGACAAGCAAAGTCGGTGTGTAGTCCTTCGTCTCTGGAAATGAGTTCGTTGC 119988
|||| ||| |||||| || ||| ||| ||||||||||| | ||||| ||||||||
Sbjct 1228645 TGTATAATAAACAAGCGAAATCGCAGTGAAGTCCTTCGTCGCGAGAAATTAGTTCGTT-- 1228702
Query 119989 TGTAA--GTCAAGCCGGG---TAGAGCTCCTTTTTTCGAGTCTTTGATATAGTAGATTGC 120043
|| || || | |||||| ||| | | ||||||| || | || |||| ||
Sbjct 1228703 TGAAAATGTGAGGCCGGGCATAAGACCACGTTTTTTC-AGCC--------AGAAGATCGC 1228753
Query 120044 AGCAAAACTA-CCAGaaaaaaaGACGCCTTCGACGATAGCAAAAGCGACCATGCGTTCGG 120102
| || ||| | || || || |||| |||||| ||| |||||| ||||| | |||||| |
Sbjct 1228754 A-CAGAACGAGCCGGAGAAGAAGATGCCTTCTACGCAAGCAAACGCGACGAGGCGTTCTG 1228812
Query 120103 CGAATG 120108
||||||
Sbjct 1228813 CGAATG 1228818
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478657038981120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |