Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq53 98.7 1e-15 seq27 82.4 7e-11 >seq53 Length=1478458 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || ||||| | || || || | |||||| |||| | || Sbjct 997205 ATGCAAATCTTCGTGAAAACTCTGACAGGGAAGACCATCACCCTCGAGGTCGAGAGCTCT 997264 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | || ||| |||||| ||||| || || || ||||| || || Sbjct 997265 GACACTATTGACAATGTAAAAGCTAAGATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 997324 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 ||||||||||||| || ||| || || ||||| |||| |||| | | ||| || || || Sbjct 997325 CAAAGACTCATTTTCGCCGGGAAGCAGCTCGAGGATGGCAGAACCCT-AGCTGATTACAA 997383 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||| || || || |||||| | |||||||| || ||||| | || || Sbjct 997384 CATCCAGAAGGAGTCTACTCTTCATCTGGTGCTACGACTTCGCGGTGG 997431 >seq27 Length=2003651 Score = 82.4 bits (90), Expect = 7e-11 Identities = 133/186 (72%), Gaps = 18/186 (10%) Strand=Plus/Plus Query 119929 TGTAGTATAGACAAGCAAAGTCGGTGTGTAGTCCTTCGTCTCTGGAAATGAGTTCGTTGC 119988 |||| ||| |||||| || ||| ||| ||||||||||| | ||||| |||||||| Sbjct 1228645 TGTATAATAAACAAGCGAAATCGCAGTGAAGTCCTTCGTCGCGAGAAATTAGTTCGTT-- 1228702 Query 119989 TGTAA--GTCAAGCCGGG---TAGAGCTCCTTTTTTCGAGTCTTTGATATAGTAGATTGC 120043 || || || | |||||| ||| | | ||||||| || | || |||| || Sbjct 1228703 TGAAAATGTGAGGCCGGGCATAAGACCACGTTTTTTC-AGCC--------AGAAGATCGC 1228753 Query 120044 AGCAAAACTA-CCAGaaaaaaaGACGCCTTCGACGATAGCAAAAGCGACCATGCGTTCGG 120102 | || ||| | || || || |||| |||||| ||| |||||| ||||| | |||||| | Sbjct 1228754 A-CAGAACGAGCCGGAGAAGAAGATGCCTTCTACGCAAGCAAACGCGACGAGGCGTTCTG 1228812 Query 120103 CGAATG 120108 |||||| Sbjct 1228813 CGAATG 1228818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478657038981120