Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31]
896 sequences; 295,462,401 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq59 118 3e-21
seq2 111 4e-19
>seq59
Length=1347071
Score = 118 bits (130), Expect = 3e-21
Identities = 316/469 (67%), Gaps = 17/469 (4%)
Strand=Plus/Minus
Query 22479 TTCATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGC 22538
||| |||||||| ||||| | || |||||| || |||||||| ||||| || || |
Sbjct 1071116 TTCTTTCGCGGATCGTCTCGTCGCTTTTGCTTGCGTGGAAGGCATCTTCTTCTCCGGCTC 1071057
Query 22539 ATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAA 22598
|| || || ||||||||||| |||||||| | ||||||| || || || ||||| ||
Sbjct 1071056 GTTCTGCGCGATCTTTTGGCTGAAAAAACGCGGGCTTATGCCCGGCCTCACATTTTCCAA 1070997
Query 22599 TGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAA 22658
||| ||||| || || || || ||||| ||||| || ||| | | || |
Sbjct 1070996 TGAACTAATTTCTCGCGACGAAGGACTTCACTGTGATTTCGCTTGTTTATTGTA---CAG 1070940
Query 22659 TCATATCATTCATAAACTTCCATATGAA-ACTGTA-CTTGATATTATTACAAATGCAGTT 22716
| | | | || ||| | | ||| || || | ||| ||| | | |||||
Sbjct 1070939 TTTGCTGAAGAACAAGCTTACCGAAGAACACGTTAGATCGATCGTAT--CCGACGCAGTG 1070882
Query 22717 GAACTTGAACGTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATG-- 22774
|| | || || ||| || ||| | || | || || || | ||||| ||||
Sbjct 1070881 GATATCGAGCGAGAATTCATCTGCAATGCACT-CCCGT--GT-GCGTTGGTCGGAATGAA 1070826
Query 22775 CCG-AATC-AATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGG 22832
| | ||| |||||| ||||| |||| || || ||||| | | || | |||||
Sbjct 1070825 CAGTGATCTGATGAGTCAGTATATCGAATTCGTAGCTGATCGATTGATCGTTGCTCTCGG 1070766
Query 22833 TTAT-GCAAAGCATTATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTG 22891
||| ||||| ||||||||||| |||||| || || |||||||| | ||||| |
Sbjct 1070765 ATATAGCAAA-ATTTATAACGTCGCTAATCCTTTCGATTGGATGGAGTTGATTTCGTTGC 1070707
Query 22892 AAGGAAAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGC 22940
| || ||||| ||||||||||| || ||||| || || ||||| || ||
Sbjct 1070706 AGGGGAAGACAAATTTCTTCGAGAAGAGAGTAGGAGACTACCAGAAGGC 1070658
>seq2
Length=5918456
Score = 111 bits (122), Expect = 4e-19
Identities = 310/465 (67%), Gaps = 12/465 (3%)
Strand=Plus/Plus
Query 22479 TTCATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGC 22538
||| |||||||| ||||| | || |||||| || |||||||| ||||| || || |
Sbjct 905249 TTCTTTCGCGGATCGTCTCGTCGCTTTTGCTTGCGTGGAAGGCATCTTCTTCTCCGGCTC 905308
Query 22539 ATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAA 22598
|| || || ||||||||||| |||||||| | ||||||| || || || ||| |||
Sbjct 905309 GTTCTGCGCGATCTTTTGGCTGAAAAAACGCGGGCTTATGCCCGGCCTCACATTTCCAA- 905367
Query 22599 TGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAA 22658
||| ||||| || || |||| ||||| ||||| || ||| | | || |
Sbjct 905368 TGAACTAATTTCTCGCGACGAGGA-CTTCACTGTGATTTCGCTTGTTTATTGTACAGTTT 905426
Query 22659 TCATATCATTCATAAACTTCCATATGAA-ACTGTACTT-GATATTATTACAAATGCAGTT 22716
| | | | || ||| | | ||| || || | ||| ||| | | |||||
Sbjct 905427 GCTGAAGA---ACAAGCTTACCGAAGAACACGTTAGATCGATCGTAT--CCGACGCAGTG 905481
Query 22717 GAACTTGAACGTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCC 22776
|| | || || ||| || ||| | || | | || || | | || || ||
Sbjct 905482 GATATCGAGCGAGAATTCATCTGCAATGCACTCCGTGTGCGT-TGGTCGGAATGAACAGT 905540
Query 22777 GAATCAATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTAT 22836
|| |||||| ||||| |||| || || ||||| | | || | ||||| |||
Sbjct 905541 GATCTGATGAGTCAGTATATCGAATTCGTAGCTGATCGATTGATCGTTGCTCTCGGATAT 905600
Query 22837 -GCAAAGCATTATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGG 22895
||||| ||||||||||| |||||| ||||| |||||||| | ||||| | | ||
Sbjct 905601 AGCAAAAT-TTATAACGTCGCTAATCCGTTTGATTGGATGGAGTTGATTTCGTTGCAGGG 905659
Query 22896 AAAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGC 22940
||||| ||||||||||| || ||||| || || ||||| || ||
Sbjct 905660 GAAGACAAATTTCTTCGAGAAGAGAGTAGGAGACTACCAGAAGGC 905704
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303338637500672
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |