Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq59 118 3e-21 seq2 111 4e-19 >seq59 Length=1347071 Score = 118 bits (130), Expect = 3e-21 Identities = 316/469 (67%), Gaps = 17/469 (4%) Strand=Plus/Minus Query 22479 TTCATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGC 22538 ||| |||||||| ||||| | || |||||| || |||||||| ||||| || || | Sbjct 1071116 TTCTTTCGCGGATCGTCTCGTCGCTTTTGCTTGCGTGGAAGGCATCTTCTTCTCCGGCTC 1071057 Query 22539 ATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAA 22598 || || || ||||||||||| |||||||| | ||||||| || || || ||||| || Sbjct 1071056 GTTCTGCGCGATCTTTTGGCTGAAAAAACGCGGGCTTATGCCCGGCCTCACATTTTCCAA 1070997 Query 22599 TGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAA 22658 ||| ||||| || || || || ||||| ||||| || ||| | | || | Sbjct 1070996 TGAACTAATTTCTCGCGACGAAGGACTTCACTGTGATTTCGCTTGTTTATTGTA---CAG 1070940 Query 22659 TCATATCATTCATAAACTTCCATATGAA-ACTGTA-CTTGATATTATTACAAATGCAGTT 22716 | | | | || ||| | | ||| || || | ||| ||| | | ||||| Sbjct 1070939 TTTGCTGAAGAACAAGCTTACCGAAGAACACGTTAGATCGATCGTAT--CCGACGCAGTG 1070882 Query 22717 GAACTTGAACGTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATG-- 22774 || | || || ||| || ||| | || | || || || | ||||| |||| Sbjct 1070881 GATATCGAGCGAGAATTCATCTGCAATGCACT-CCCGT--GT-GCGTTGGTCGGAATGAA 1070826 Query 22775 CCG-AATC-AATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGG 22832 | | ||| |||||| ||||| |||| || || ||||| | | || | ||||| Sbjct 1070825 CAGTGATCTGATGAGTCAGTATATCGAATTCGTAGCTGATCGATTGATCGTTGCTCTCGG 1070766 Query 22833 TTAT-GCAAAGCATTATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTG 22891 ||| ||||| ||||||||||| |||||| || || |||||||| | ||||| | Sbjct 1070765 ATATAGCAAA-ATTTATAACGTCGCTAATCCTTTCGATTGGATGGAGTTGATTTCGTTGC 1070707 Query 22892 AAGGAAAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGC 22940 | || ||||| ||||||||||| || ||||| || || ||||| || || Sbjct 1070706 AGGGGAAGACAAATTTCTTCGAGAAGAGAGTAGGAGACTACCAGAAGGC 1070658 >seq2 Length=5918456 Score = 111 bits (122), Expect = 4e-19 Identities = 310/465 (67%), Gaps = 12/465 (3%) Strand=Plus/Plus Query 22479 TTCATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGC 22538 ||| |||||||| ||||| | || |||||| || |||||||| ||||| || || | Sbjct 905249 TTCTTTCGCGGATCGTCTCGTCGCTTTTGCTTGCGTGGAAGGCATCTTCTTCTCCGGCTC 905308 Query 22539 ATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAA 22598 || || || ||||||||||| |||||||| | ||||||| || || || ||| ||| Sbjct 905309 GTTCTGCGCGATCTTTTGGCTGAAAAAACGCGGGCTTATGCCCGGCCTCACATTTCCAA- 905367 Query 22599 TGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAA 22658 ||| ||||| || || |||| ||||| ||||| || ||| | | || | Sbjct 905368 TGAACTAATTTCTCGCGACGAGGA-CTTCACTGTGATTTCGCTTGTTTATTGTACAGTTT 905426 Query 22659 TCATATCATTCATAAACTTCCATATGAA-ACTGTACTT-GATATTATTACAAATGCAGTT 22716 | | | | || ||| | | ||| || || | ||| ||| | | ||||| Sbjct 905427 GCTGAAGA---ACAAGCTTACCGAAGAACACGTTAGATCGATCGTAT--CCGACGCAGTG 905481 Query 22717 GAACTTGAACGTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCC 22776 || | || || ||| || ||| | || | | || || | | || || || Sbjct 905482 GATATCGAGCGAGAATTCATCTGCAATGCACTCCGTGTGCGT-TGGTCGGAATGAACAGT 905540 Query 22777 GAATCAATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTAT 22836 || |||||| ||||| |||| || || ||||| | | || | ||||| ||| Sbjct 905541 GATCTGATGAGTCAGTATATCGAATTCGTAGCTGATCGATTGATCGTTGCTCTCGGATAT 905600 Query 22837 -GCAAAGCATTATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGG 22895 ||||| ||||||||||| |||||| ||||| |||||||| | ||||| | | || Sbjct 905601 AGCAAAAT-TTATAACGTCGCTAATCCGTTTGATTGGATGGAGTTGATTTCGTTGCAGGG 905659 Query 22896 AAAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGC 22940 ||||| ||||||||||| || ||||| || || ||||| || || Sbjct 905660 GAAGACAAATTTCTTCGAGAAGAGAGTAGGAGACTACCAGAAGGC 905704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303338637500672