Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq143 98.7 9e-16 seq251 95.1 1e-14 seq2 87.8 2e-12 seq81 84.2 2e-11 >seq143 Length=574977 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || |||| || || | || ||| |||| |||||| || Sbjct 166265 ATGCAGATCTTCGTCAAGACTCTAACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCG 166206 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || |||||||| | ||||| ||||| ||||| || ||||| || || ||||| Sbjct 166205 GATACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGATCAG 166146 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | || |||||||| ||||| || | | | | || ||||||||| Sbjct 166145 CAGAGGCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCTGATTATAAC 166086 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || ||||| || |||| | || || |||||||| || || Sbjct 166085 ATCCAGAAGGAATCCACGCTTCACCTCGTTTTGAGATTGAGGGGTGG 166039 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || | || ||| |||| |||||| || Sbjct 166493 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCG 166434 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | ||||| ||||| ||||| || ||||| || || ||||| Sbjct 166433 GACACCATTGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCCCCAGATCAG 166374 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | | ||||||||||| || |||| | | | || ||||||||| Sbjct 166373 CAGAGGCTCATCTTTGCTGGCAAGCAACTTGAGGATGGCCGCACGCTCGCTGATTATAAC 166314 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || ||||| || |||| | || || |||||||| || || Sbjct 166313 ATCCAGAAGGAATCCACGCTTCACCTCGTTTTGAGATTGAGGGGTGG 166267 Score = 91.5 bits (100), Expect = 1e-13 Identities = 166/242 (69%), Gaps = 1/242 (0%) Strand=Plus/Minus Query 23976 TTTTAGCCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATC 24035 |||| | ||||| | |||| | || || || || | || || || | || ||| || Sbjct 166735 TTTTCTCGAAACAGA-TGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTC 166677 Query 24036 GAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGC 24095 || |||||| || || |||||||| | |||||| ||||| ||||| || ||| Sbjct 166676 GAGGTCGAGTCCTCGGATACCATCGATAACGTCAAAGCCAAGATCCAAGACAAGGAGGGC 166617 Query 24096 ATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC 24155 || || || || || ||||| || || | | |||||||| ||||| || | | | | Sbjct 166616 ATCCCCCCAGACCAGCAGAGGCTCATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGCACG 166557 Query 24156 GTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGA 24215 || ||||||||||| || || ||||| || |||| | || || |||||||| || Sbjct 166556 CTCGCTGATTATAACATCCAGAAGGAATCCACGCTTCACCTCGTTTTGAGATTGAGGGGT 166497 Query 24216 GG 24217 || Sbjct 166496 GG 166495 >seq251 Length=123057 Score = 95.1 bits (104), Expect = 1e-14 Identities = 167/242 (69%), Gaps = 1/242 (0%) Strand=Plus/Minus Query 23976 TTTTAGCCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATC 24035 |||| | ||||| | |||| | || || || || | || || || | || ||| | Sbjct 99429 TTTTCTCGAAACAGA-TGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTG 99371 Query 24036 GAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGC 24095 || |||||| || || |||||||| | |||||| ||||| ||||| || ||| Sbjct 99370 GAGGTCGAGTCCTCGGATACCATCGACAACGTCAAAGCCAAGATCCAAGACAAGGAGGGC 99311 Query 24096 ATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC 24155 || || || || || ||||| || |||| || |||||||| ||||| || | | | | Sbjct 99310 ATCCCCCCAGACCAGCAGAGGCTCATTTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACG 99251 Query 24156 GTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGA 24215 || ||||||||||| || || ||||| || |||| | || || |||||||| || Sbjct 99250 CTCGCTGATTATAACATCCAGAAGGAATCCACGCTTCACCTCGTTTTGAGATTGAGGGGT 99191 Query 24216 GG 24217 || Sbjct 99190 GG 99189 >seq2 Length=5918456 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | ||||| || | || ||| | || || || || Sbjct 561005 ATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAATCCTCG 561064 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || ||| |||||| ||||| || || || || || ||||| Sbjct 561065 GACACCATCGACAACGTAAAAGCCAAGATTCAAGACAAGGAGGGAATCCCACCAGATCAG 561124 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||||| || |||||||| ||||| || | |||| || |||||| ||| Sbjct 561125 CAGAGGCTGATTTTCGCTGGCAAGCAGCTCGAGGACGGGAGAACACTCGCCGATTACAAC 561184 Query 24171 ATTCAAAAAGA 24181 || || || || Sbjct 561185 ATCCAGAAGGA 561195 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | || || || | || ||| |||| || ||| | | Sbjct 561689 ATGCAAATTTTCGTCAAGACCCTCACCGGGAAGACTATCACCCTCGAGGTTGAGTCTTCC 561748 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || ||||| ||||| || ||||| || || ||||| Sbjct 561749 GACACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAG 561808 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | |||||| | |||||||| | ||||||| ||||| | ||| |||||| Sbjct 561809 CAGCGGTTGATTTTTGCAGGCAAGCAGTTGGAAGATGGCAGAACTCTGGCCGACTATAAC 561868 Query 24171 ATTCAAAAAGAATCTAC 24187 || ||||| ||||| || Sbjct 561869 ATCCAAAAGGAATCAAC 561885 >seq81 Length=1043490 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/143 (73%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 ||||| ||||| |||||||||||||| ||| | || || | | ||| |||||| | || Sbjct 708213 GACAAGGAAGGTATACCTCCCGATCAGCAGCGGCTAATCTTTGCCGGGAAGCAATTGGAG 708272 Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 |||| ||| | | |||||||| ||||| ||||| || ||| |||| | || || Sbjct 708273 GATGGACGAACCCTTGCTGATTATAATATTCAGAAAGAGTCAACACTTCACCTGGTTTTG 708332 Query 24204 AGATTGAGAGGAGG-ACTATAAT 24225 ||| | ||||| || ||||| || Sbjct 708333 AGACTCAGAGGTGGAACTATGAT 708355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429931305098880