Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq53 98.7 8e-16 seq2 95.1 1e-14 >seq53 Length=1478458 Score = 98.7 bits (108), Expect = 8e-16 Identities = 154/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 115279 ATTAAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGA 115338 |||| | |||||||| || || ||||| || || || || ||||| ||| |||| || Sbjct 997198 ATTACAGATGCAAATCTTCGTGAAAACTCTGACAGGGAAGACCATCACCCTCGAGGTCGA 997257 Query 115339 GTCCAGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCG 115397 | | |||||| ||| |||| |||||| || ||| || || || || | || Sbjct 997258 GAGCTCTGACACTATTG-ACAATGTAAAAGCTAAGATTCAGGACAAGGAGGGAATTCCTC 997316 Query 115398 TTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCG 115457 || ||||||||||| |||| || || || || | || |||| || |||| | || | Sbjct 997317 CAGACCAGCAAAGACTCATTTTCGCCGGGAAGCAGCTCGAGGATGGCAGAACCCTAGCTG 997376 Query 115458 ATTATAACATTCAAAAAGAGTCTACTATACATATGGTG 115495 |||| ||||| || || ||||||||| | ||| ||||| Sbjct 997377 ATTACAACATCCAGAAGGAGTCTACTCTTCATCTGGTG 997414 >seq2 Length=5918456 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| ||||| || ||||| || || || || ||| |||| ||||| | Sbjct 561689 ATGCAAATTTTCGTCAAGACCCTCACCGGGAAGACTATCACCCTCGAGGTTGAGTCTTCC 561748 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | ||||| || || || || || || || ||| ||||| ||||| Sbjct 561749 GACAC-CATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCA 561807 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| | | |||| ||| ||||| || || ||||||| || ||| ||||||| ||||| Sbjct 561808 GCAGCGGTTGATTTTTGCAGGCAAGCAGTTGGAAGATGGCAGAACTCTGGCCGACTATAA 561867 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTG 115495 ||| ||||| || || || | || ||||| Sbjct 561868 CATCCAAAAGGAATCAACCCTCCACCTGGTG 561898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425339355243520