Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31]
896 sequences; 295,462,401 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq34 114 1e-20
seq32 104 2e-17
seq2 100 2e-16
seq53 96.9 3e-15
seq300 87.8 1e-12
>seq34
Length=3699824
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767
||| || || || | || |||| ||| || || |||||| || ||||||||||||||
Sbjct 904587 CCCACCACGCAGACGAAGCACCAGATGGAGAGTACTCTCCTTCTGAATGTTGTAGTCGGC 904646
Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827
| ||| | ||||||||| || || || ||| | || |||| ||| || ||| |||
Sbjct 904647 AAGGGTGCGGCCGTCCTCCAGCTGCTTCCCAGCAAATATCAGCCTCTGCTGATCCGGAGG 904706
Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887
| ||| |||||||| ||||| | |||||| | | | ||||| | ||||
Sbjct 904707 GATGCCTTCTTTGTCCTGAATTTTCGCCTTCACATTATCGATCGTGTCCGAGCTCTCCAC 904766
Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|||| ||||||||| |||||||| || || || ||||| || |||||
Sbjct 904767 CTCCAGGGTGATGGTCTTTCCGGTAAGGGTCTTTACAAATATTTGCAT 904814
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || || || | || |||| ||| || ||| |||||| || || |||||||||||
Sbjct 905044 CCGCCACGGAGACGCAACACCAGATGGAGAGTGCTCTCCTTCTGGATATTGTAGTCGGCA 905103
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | |||| ||||| || || || ||| |||| |||| ||| ||||| ||
Sbjct 905104 AGGGTACGGCCGTCTTCCAACTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCTGGGGGA 905163
Query 16829 ACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| || || ||||| || ||||| |||||| | | | | ||||| | |||
Sbjct 905164 ATACCTTCCTTGTCCTGAATCTTTGC--CTTCACATTGTCAATGGTGTCAGAGCTCTCGA 905221
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
||||| ||||||||| || || || || || || || || ||||||||
Sbjct 905222 CTTCCAAGGTGATGGTCTTCCCAGTGAGAGTCTTCACGAAGATCTGCAT 905270
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || || || | ||| |||| || || || |||||||| || |||||||| || ||
Sbjct 905272 CCACCGCGAAGTCGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCAGCA 905331
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| |||| ||||| ||||| || || | || |||| || |||||| |||
Sbjct 905332 AGGGTACGACCGTCTTCCAACTGTTTCCCAGCGAAGATGAGCCTTTGCTGGTCCGGAGGA 905391
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| ||||| ||||| || ||||| ||| || | | | | |||||| | ||
Sbjct 905392 ATTCCCTCCTTGTCTTGGATTTTTGC--CTTTACATTGTCGATCGTGTCGGAGCTTTCGA 905449
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| | |||||||| || ||||| || ||||||||||| ||||||||
Sbjct 905450 CCTCGAGAGTGATGGTCTTCCCGGTTAGAGTTTTGACAAAGATCTGCAT 905498
>seq32
Length=1954954
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
||||| | |||||||| || | || || || ||||||||||| ||||||||||||||
Sbjct 589838 CCTCCCCTAAGCCTCAGAACAAGGTGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCA 589897
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | |||| || | |||||||| ||| | ||||||| ||| || ||| |||
Sbjct 589898 AGGGTACGGCCGTCTTCAAGCTGTTTGCCGGCAAAGATAAGCCTCTGCTGATCCGGAGGA 589957
Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888
| ||||| ||||| || | | ||| || | | | | || || | |||
Sbjct 589958 ATACCCTCCTTGTCCTGGATCTTCGCCTTTACGTTGTCAATCGTATCTGAAGACTCAACC 590017
Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|||| |||||| || || || || || || |||||||| || |||||
Sbjct 590018 TCCAAGGTGATCGTCTTCCCAGTGAGTGTCTTGACAAAGATTTGCAT 590064
>seq2
Length=5918456
Score = 100 bits (110), Expect = 2e-16
Identities = 161/230 (70%), Gaps = 1/230 (0%)
Strand=Plus/Minus
Query 16706 TACCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCG 16765
||||| || || || | || |||| || || ||||| ||||| || |||||||||||
Sbjct 561689 TACCC-CCGCGAAGGCGGAGCACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCA 561631
Query 16766 GCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACA 16825
|||| ||| || | || ||||| || ||||| ||| |||| | |||||| || |||
Sbjct 561630 GCCAGAGTTCTGCCATCTTCCAACTGCTTGCCTGCAAAAATCAACCGCTGCTGATCCGGG 561571
Query 16826 GGCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885
|| | ||| || ||||| || | | |||||| | | | ||||||| | |||
Sbjct 561570 GGGATGCCTTCCTTGTCCTGGATCTTCGCCTTCACGTTATCGATAGTGTCGGAAGACTCG 561511
Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| | ||| || || || || || || || ||||| |||||||||||
Sbjct 561510 ACCTCGAGGGTAATAGTCTTCCCAGTGAGGGTCTTGACGAAAATCTGCAT 561461
Score = 98.7 bits (108), Expect = 8e-16
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| || || ||| |||||| || ||||||||||| || | ||| | |||||
Sbjct 561444 AGCACCAGGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCAGCGAGGGTCCTCCCGTCC 561385
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843
|| | || ||||| || |||| |||| ||| |||||| ||| | ||||| |||||
Sbjct 561384 TCGAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCCGGAGGGATACCCTCCTTGTCC 561325
Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903
||| | | |||||| | | | ||||||| | ||| || | ||| || ||
Sbjct 561324 TGAATCTTCGCCTTCACGTTATCGATAGTGTCGGAAGACTCGACCTCGAGGGTAATAGTC 561265
Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| ||||| || || ||||| |||||||||||
Sbjct 561264 TTCCCGGTGAGGGTCTTGACGAAAATCTGCAT 561233
>seq53
Length=1478458
Score = 96.9 bits (106), Expect = 3e-15
Identities = 151/214 (71%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| ||| || ||| |||||| || ||||||||||| || | ||| | |||||
Sbjct 998100 AGCACCAGATGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCCGCGAGGGTGCGGCCGTCC 998041
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843
|||| || || |||||| | || |||| ||| ||||| ||| | || || |||||
Sbjct 998040 TCCAGCTGCTTCCCCGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATCCCTTCCTTGTCC 997981
Query 16844 GCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
||||| ||| || || | | | || || | |||| || | ||||||||
Sbjct 997980 TGAATTTTAGCT--TTAACATTATCGATCGTATCAGAGCTCTCCACCTCAAGGGTGATGG 997923
Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
| |||||||| || || || ||||||||||||||
Sbjct 997922 TCTTTCCGGTAAGGGTCTTCACAAAAATCTGCAT 997889
Score = 89.7 bits (98), Expect = 4e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| |||| ||||||||||| || ||||| || || || | ||| | |||||
Sbjct 997644 AGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTATAATCAGCAAGGGTACGGCCGTCC 997585
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843
||||| || || || ||| | || |||| ||| ||||| || | || || |||||
Sbjct 997584 TCCAACTGCTTACCAGCAAATATCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCC 997525
Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903
||| | |||||| | | | | |||||| | ||| ||||| ||| || ||
Sbjct 997524 TGAATCTTGGCCTTCACGTTGTCGATCGTGTCGGAGCTCTCGACTTCCAAGGTTATTGTC 997465
Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|||||||| || || || || || ||||||||
Sbjct 997464 TTTCCGGTGAGAGTCTTCACGAAGATCTGCAT 997433
>seq300
Length=293291
Score = 87.8 bits (96), Expect = 1e-12
Identities = 149/214 (70%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| || | ||| || ||||| ||||| || |||||||||||||| | ||| | | |||
Sbjct 10959 AGAACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCC 11018
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842
|| | || ||||| ||| | || |||| ||| |||||| ||| | || || |||||
Sbjct 11019 TCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGAGGAATCCCTTCCTTGTCC 11078
Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
|| || ||| || || | | | | || || || |||| || | ||||||||
Sbjct 11079 TGGATCTTGGCT--TTAACATTGTCGATTGTATCTGAGGACTCCACCTCAAGGGTGATGG 11136
Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
| || ||||| || || || || || ||||||||
Sbjct 11137 TCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 11170
Score = 87.8 bits (96), Expect = 1e-12
Identities = 158/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
||||| | | ||| || || | || || ||||||||||| || ||||||||||||||
Sbjct 11172 CCTCCCCTCAACCTTAGCACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCA 11231
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | | ||||| | |||||||| ||| | || |||| ||| ||||| |||
Sbjct 11232 AGGGTGCGGCCATCCTCAAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGA 11291
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| |||||| || || || ||||| ||| || | | | | || || || |||
Sbjct 11292 ATGCCCTCCTTATCCTGGATCTTTGC--CTTTACATTGTCGATGGTATCCGAGGACTCGA 11349
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| | |||||| || || || || || || || || || ||||||||
Sbjct 11350 CCTCGAGGGTGATCGTCTTGCCTGTGAGGGTCTTCACGAAGATCTGCAT 11398
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405083576439040
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