Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq34 114 1e-20 seq32 104 2e-17 seq2 100 2e-16 seq53 96.9 3e-15 seq300 87.8 1e-12 >seq34 Length=3699824 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || || || | || |||| ||| || || |||||| || |||||||||||||| Sbjct 904587 CCCACCACGCAGACGAAGCACCAGATGGAGAGTACTCTCCTTCTGAATGTTGTAGTCGGC 904646 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | ||| | ||||||||| || || || ||| | || |||| ||| || ||| ||| Sbjct 904647 AAGGGTGCGGCCGTCCTCCAGCTGCTTCCCAGCAAATATCAGCCTCTGCTGATCCGGAGG 904706 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | ||| |||||||| ||||| | |||||| | | | ||||| | |||| Sbjct 904707 GATGCCTTCTTTGTCCTGAATTTTCGCCTTCACATTATCGATCGTGTCCGAGCTCTCCAC 904766 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| |||||||| || || || ||||| || ||||| Sbjct 904767 CTCCAGGGTGATGGTCTTTCCGGTAAGGGTCTTTACAAATATTTGCAT 904814 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | || |||| ||| || ||| |||||| || || ||||||||||| Sbjct 905044 CCGCCACGGAGACGCAACACCAGATGGAGAGTGCTCTCCTTCTGGATATTGTAGTCGGCA 905103 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | |||| ||||| || || || ||| |||| |||| ||| ||||| || Sbjct 905104 AGGGTACGGCCGTCTTCCAACTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCTGGGGGA 905163 Query 16829 ACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || ||||| || ||||| |||||| | | | | ||||| | ||| Sbjct 905164 ATACCTTCCTTGTCCTGAATCTTTGC--CTTCACATTGTCAATGGTGTCAGAGCTCTCGA 905221 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| ||||||||| || || || || || || || || |||||||| Sbjct 905222 CTTCCAAGGTGATGGTCTTCCCAGTGAGAGTCTTCACGAAGATCTGCAT 905270 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| || || || |||||||| || |||||||| || || Sbjct 905272 CCACCGCGAAGTCGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCAGCA 905331 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| |||| ||||| ||||| || || | || |||| || |||||| ||| Sbjct 905332 AGGGTACGACCGTCTTCCAACTGTTTCCCAGCGAAGATGAGCCTTTGCTGGTCCGGAGGA 905391 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || ||||| ||| || | | | | |||||| | || Sbjct 905392 ATTCCCTCCTTGTCTTGGATTTTTGC--CTTTACATTGTCGATCGTGTCGGAGCTTTCGA 905449 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||| || ||||| || ||||||||||| |||||||| Sbjct 905450 CCTCGAGAGTGATGGTCTTCCCGGTTAGAGTTTTGACAAAGATCTGCAT 905498 >seq32 Length=1954954 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | |||||||| || | || || || ||||||||||| |||||||||||||| Sbjct 589838 CCTCCCCTAAGCCTCAGAACAAGGTGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCA 589897 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | |||| || | |||||||| ||| | ||||||| ||| || ||| ||| Sbjct 589898 AGGGTACGGCCGTCTTCAAGCTGTTTGCCGGCAAAGATAAGCCTCTGCTGATCCGGAGGA 589957 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||| ||||| || | | ||| || | | | | || || | ||| Sbjct 589958 ATACCCTCCTTGTCCTGGATCTTCGCCTTTACGTTGTCAATCGTATCTGAAGACTCAACC 590017 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||| || || || || || || |||||||| || ||||| Sbjct 590018 TCCAAGGTGATCGTCTTCCCAGTGAGTGTCTTGACAAAGATTTGCAT 590064 >seq2 Length=5918456 Score = 100 bits (110), Expect = 2e-16 Identities = 161/230 (70%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 16706 TACCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCG 16765 ||||| || || || | || |||| || || ||||| ||||| || ||||||||||| Sbjct 561689 TACCC-CCGCGAAGGCGGAGCACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCA 561631 Query 16766 GCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACA 16825 |||| ||| || | || ||||| || ||||| ||| |||| | |||||| || ||| Sbjct 561630 GCCAGAGTTCTGCCATCTTCCAACTGCTTGCCTGCAAAAATCAACCGCTGCTGATCCGGG 561571 Query 16826 GGCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 || | ||| || ||||| || | | |||||| | | | ||||||| | ||| Sbjct 561570 GGGATGCCTTCCTTGTCCTGGATCTTCGCCTTCACGTTATCGATAGTGTCGGAAGACTCG 561511 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||| || || || || || || || ||||| ||||||||||| Sbjct 561510 ACCTCGAGGGTAATAGTCTTCCCAGTGAGGGTCTTGACGAAAATCTGCAT 561461 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||| |||||| || ||||||||||| || | ||| | ||||| Sbjct 561444 AGCACCAGGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCAGCGAGGGTCCTCCCGTCC 561385 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || ||||| || |||| |||| ||| |||||| ||| | ||||| ||||| Sbjct 561384 TCGAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCCGGAGGGATACCCTCCTTGTCC 561325 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | | |||||| | | | ||||||| | ||| || | ||| || || Sbjct 561324 TGAATCTTCGCCTTCACGTTATCGATAGTGTCGGAAGACTCGACCTCGAGGGTAATAGTC 561265 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||| || || ||||| ||||||||||| Sbjct 561264 TTCCCGGTGAGGGTCTTGACGAAAATCTGCAT 561233 >seq53 Length=1478458 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || ||| |||||| || ||||||||||| || | ||| | ||||| Sbjct 998100 AGCACCAGATGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCCGCGAGGGTGCGGCCGTCC 998041 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||| || || |||||| | || |||| ||| ||||| ||| | || || ||||| Sbjct 998040 TCCAGCTGCTTCCCCGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATCCCTTCCTTGTCC 997981 Query 16844 GCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 ||||| ||| || || | | | || || | |||| || | |||||||| Sbjct 997980 TGAATTTTAGCT--TTAACATTATCGATCGTATCAGAGCTCTCCACCTCAAGGGTGATGG 997923 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | |||||||| || || || |||||||||||||| Sbjct 997922 TCTTTCCGGTAAGGGTCTTCACAAAAATCTGCAT 997889 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| |||| ||||||||||| || ||||| || || || | ||| | ||||| Sbjct 997644 AGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTATAATCAGCAAGGGTACGGCCGTCC 997585 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 ||||| || || || ||| | || |||| ||| ||||| || | || || ||||| Sbjct 997584 TCCAACTGCTTACCAGCAAATATCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCC 997525 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | |||||| | | | | |||||| | ||| ||||| ||| || || Sbjct 997524 TGAATCTTGGCCTTCACGTTGTCGATCGTGTCGGAGCTCTCGACTTCCAAGGTTATTGTC 997465 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||||||| || || || || || |||||||| Sbjct 997464 TTTCCGGTGAGAGTCTTCACGAAGATCTGCAT 997433 >seq300 Length=293291 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || ||||| ||||| || |||||||||||||| | ||| | | ||| Sbjct 10959 AGAACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCC 11018 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | || ||||| ||| | || |||| ||| |||||| ||| | || || ||||| Sbjct 11019 TCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGAGGAATCCCTTCCTTGTCC 11078 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || ||| || || | | | | || || || |||| || | |||||||| Sbjct 11079 TGGATCTTGGCT--TTAACATTGTCGATTGTATCTGAGGACTCCACCTCAAGGGTGATGG 11136 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || ||||| || || || || || |||||||| Sbjct 11137 TCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 11170 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | | ||| || || | || || ||||||||||| || |||||||||||||| Sbjct 11172 CCTCCCCTCAACCTTAGCACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCA 11231 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||| | |||||||| ||| | || |||| ||| ||||| ||| Sbjct 11232 AGGGTGCGGCCATCCTCAAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGA 11291 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| || || || ||||| ||| || | | | | || || || ||| Sbjct 11292 ATGCCCTCCTTATCCTGGATCTTTGC--CTTTACATTGTCGATGGTATCCGAGGACTCGA 11349 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||| || || || || || || || || || |||||||| Sbjct 11350 CCTCGAGGGTGATCGTCTTGCCTGTGAGGGTCTTCACGAAGATCTGCAT 11398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405083576439040