Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq81 131 1e-25 seq58 131 1e-25 seq10 131 1e-25 seq34 129 4e-25 seq171 116 2e-21 seq53 109 4e-19 seq36 109 4e-19 seq360 102 5e-17 seq97 100 2e-16 seq476 95.1 8e-15 seq328 95.1 8e-15 >seq81 Length=1043490 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 1026913 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 1026972 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1026973 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1027007 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 1035709 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 1035768 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1035769 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1035803 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 1028926 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 1028985 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 1028986 GCCCGTATTTAGCCTT 1029001 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 1037718 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 1037777 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 1037778 GCCCGTATTTAGCCTT 1037793 >seq58 Length=1363798 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 1340376 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 1340317 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1340316 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1340282 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 1338363 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 1338304 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 1338303 GCCCGTATTTAGCCTT 1338288 >seq10 Length=3646474 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 3333671 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 3333612 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 3333611 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 3333577 Score = 120 bits (132), Expect = 2e-22 Identities = 84/96 (88%), Gaps = 5/96 (5%) Strand=Plus/Minus Query 25901 TAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG-----GTAATCTCG 25955 ||||||| || ||||||||||||||||||| ||||||||| |||| | ||||||| Sbjct 21596 TAAGCCCATTTCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTTGGAATCTCG 21537 Query 25956 TTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||||| |||||||||||||||||||||||||||| Sbjct 21536 TTAATCCATTCATGCGCGTCACTAATTAGATGACGA 21501 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 3331658 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 3331599 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 3331598 GCCCGTATTTAGCCTT 3331583 >seq34 Length=3699824 Score = 129 bits (142), Expect = 4e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||||| ||||| || |||||||||||||| || |||||||| || | Sbjct 904814 TACCACCGCGGAGACGCAGCACCAGGTGGAGAGTGCTCTCCTTCTGGATATTGTAGTCGG 904873 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | ||| |||| || ||||| || || ||||| || || | || || || | || Sbjct 904874 CAAGGGTACGGCCGTCTTCCAATTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCCGGGG 904933 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| |||||| |||||| |||||| || | || |||||| ||| |||| Sbjct 904934 GAATACCTTCCTTGTCCTGAATTTTGGCCTTCACGTTATCGATAGTATCCGAACTCTCAA 904993 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | || || || || || || | ||| |||||||| |||||||| Sbjct 904994 CTTCAAGAGTGATCGTCTTGCCAGTAAGGGTCTTCACGAAGATCTGCAT 905042 Score = 113 bits (124), Expect = 3e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || | | ||||||||||| ||| |||||||||||||| || |||||||| || | Sbjct 905042 TACCGCCACGGAGACGCAACACCAGATGGAGAGTGCTCTCCTTCTGGATATTGTAGTCGG 905101 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | ||| |||| || || || || || ||||| || || | || || || | || Sbjct 905102 CAAGGGTACGGCCGTCTTCCAACTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCTGGGG 905161 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| |||||| ||| ||| ||||||||| | | || || || || | Sbjct 905162 GAATACCTTCCTTGTCCTGAATCTTTGCCTTCACATTGTCAATGGTGTCAGAGCTCTCGA 905221 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 |||| || || || || || || || | || |||||||| ||||||||| Sbjct 905222 CTTCCAAGGTGATGGTCTTCCCAGTGAGAGTCTTCACGAAGATCTGCATG 905271 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | || ||| | ||||| ||| ||||| |||||||| ||||| ||||| || | Sbjct 904588 CCACCACGCAGACGAAGCACCAGATGGAGAGTACTCTCCTTCTGAATGTTGTAGTCGGCA 904647 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || |||| || | || || || |||||||| || | || ||||| | ||| Sbjct 904648 AGGGTGCGGCCGTCCTCCAGCTGCTTCCCAGCAAATATCAGCCTCTGCTGATCCGGAGGG 904707 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||||||| |||||| ||||||||| | || || || || || || Sbjct 904708 ATGCCTTCTTTGTCCTGAATTTTCGCCTTCACATTATCGATCGTGTCCGAGCTCTCCACC 904767 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || || || || || | ||| || || ||||| ||||| Sbjct 904768 TCCAGGGTGATGGTCTTTCCGGTAAGGGTCTTTACAAATATTTGCAT 904814 >seq171 Length=389842 Score = 116 bits (128), Expect = 2e-21 Identities = 82/94 (87%), Gaps = 5/94 (5%) Strand=Plus/Plus Query 25903 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTT 25957 ||||| || ||||||||||||||||||| ||||||||| | || || ||||||||| Sbjct 139563 AGCCCATTTCCTTGGCTGTGGTTTCGCTGGATAGTAGACATGGACAGTGGGAATCTCGTT 139622 Query 25958 AATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||| |||||||||||||||||||||||||||| Sbjct 139623 AATCCATTCATGCGCGTCACTAATTAGATGACGA 139656 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||| | || ||||||||||||||||||| |||||| | |||| || |||||||| Sbjct 163024 AAGCACATTTCCTTGGCTGTGGTTTCGCTGGATAGTCAACAGGGACAGTGGGAATCTCGT 163083 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 163084 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 163118 >seq53 Length=1478458 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | ||||||||| |||||||||||||| ||||| || ||||||| Sbjct 997889 TACCACCACGGAGACGAAGCACCAAATGGAGAGTGCTCTCCTTCTGAATGTTATAATCAG 997830 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | || | || || | ||| ||||| ||||| ||||| | || || || | || Sbjct 997829 CTAGAGTGCGGCCATCTTCCAGTTGCTTTCCAGCAAAAATTAGCCTCTGCTGGTCCGGGG 997770 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| || ||| |||||| ||| ||||| | | ||||| ||| || | Sbjct 997769 GAATACCTTCCTTATCCTGAATTTTGGCCTTGACATTATCAATTGTATCCGAACTCTCCA 997710 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 | || | || || || || || || | || ||||| || ||||||||| Sbjct 997709 CCTCAAGAGTGATTGTCTTGCCAGTAAGCGTCTTCACAAAGATCTGCATG 997660 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38088 TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147 || || || | || ||| | ||||| |||||||||||||||||| || || ||||| || Sbjct 998118 TTTCCGCCACGCAGACGAAGCACCAGATGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCC 998059 Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 | | || |||| || | || || || ||||| || || | || || |||| Sbjct 998058 GCGAGGGTGCGGCCGTCCTCCAGCTGCTTCCCCGCAAAGATGAGCCTCTGCTGGTCGGGA 997999 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267 |||| ||||| |||||| |||||| || ||||| | || ||||| || || Sbjct 997998 GGGATCCCTTCCTTGTCCTGAATTTTAGCTTTAACATTATCGATCGTATCAGAGCTCTCC 997939 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || | || || || || || || | ||| ||||| || |||||||| Sbjct 997938 ACCTCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTCACAAAAATCTGCAT 997889 >seq36 Length=1858375 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||| | || ||||||||||||||||||| ||||||||| |||| || ||||| || Sbjct 13546 AAGCACATTTCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTTGT 13487 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||||||||||||||||||||| || Sbjct 13486 TAATCCATTCATGCGCGTCACTAATTAGATGATGA 13452 >seq360 Length=76517 Score = 102 bits (112), Expect = 5e-17 Identities = 77/91 (85%), Gaps = 5/91 (5%) Strand=Plus/Minus Query 25906 CCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAAT 25960 || || |||||| |||||||||||| ||||||||| |||| || |||||||||||| Sbjct 15200 CCATTTCCTTGGATGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGTTAAT 15141 Query 25961 CCTTTCATGCGCGTCACTAATTAGATGACGA 25991 || ||||||||| ||||||||||||||| || Sbjct 15140 CCATTCATGCGCATCACTAATTAGATGATGA 15110 >seq97 Length=906600 Score = 100 bits (110), Expect = 2e-16 Identities = 80/95 (84%), Gaps = 6/95 (6%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||| | || ||||||||||||||||||| |||||| || |||| || |||||||| Sbjct 849766 AAGCACATTTCCTTGGCTGTGGTTTCGCTGGATAGTCGACAGGGACAGTGGGAATCTCGT 849825 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||||| ||||||||||||||||| Sbjct 849826 TAATCCATTCATGCGC-ACACTAATTAGATGACGA 849859 >seq476 Length=65274 Score = 95.1 bits (104), Expect = 8e-15 Identities = 78/95 (82%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| || ||||||||||||||| ||| ||||||||| |||| | || ||||| Sbjct 17338 AAGCCCATTTCCTTGGCTGTGGTTTGGCTGGATAGTAGACAGGGACATTGAGAACCTCGT 17279 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||| ||||| || ||||||||||||||||||| Sbjct 17278 TAATCTATTCATACGGGTCACTAATTAGATGACGA 17244 >seq328 Length=89682 Score = 95.1 bits (104), Expect = 8e-15 Identities = 78/95 (82%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| || ||||||||||||||| ||| ||||||||| |||| | || ||||| Sbjct 79386 AAGCCCATTTCCTTGGCTGTGGTTTGGCTGGATAGTAGACAGGGACATTGAGAACCTCGT 79327 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||| ||||| || ||||||||||||||||||| Sbjct 79326 TAATCTATTCATACGGGTCACTAATTAGATGACGA 79292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334943542376576