Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq300 114 1e-20 seq2 111 1e-19 seq251 109 5e-19 seq32 109 5e-19 seq143 105 6e-18 seq34 102 7e-17 seq53 89.7 4e-13 >seq300 Length=293291 Score = 114 bits (126), Expect = 1e-20 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | ||||| || ||||||| | || |||||||| || Sbjct 11170 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTGGAGTCCTCA 11111 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || ||||| || || |||| || | || ||||| ||||||||||| || ||| Sbjct 11110 GATACAATCGA--CAATGTTAAAGCCAAGATCCAG-GACAAGGAAGGGATTCCTCCGGAC 11054 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | || ||||||||||| || | || |||| ||||| | | ||| ||| Sbjct 11053 CAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTCGCCGACTAC 10994 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || |||||||| || ||| | || || Sbjct 10993 AACATCCAGAAGGAATCCACCCTCCATCTTGTTCT 10959 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || | ||||| |||| || ||||| || Sbjct 11398 ATGCAGATCTTCGTGAAGACCCTCACAGGCAAGACGATCACCCTCGAGGTCGAGTCCTCG 11339 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || ||||| || || ||| ||| ||| || || || || ||||| || |||| Sbjct 11338 GATACCATCGA--CAATGTAAAGGCAAAGATCCAGGATAAGGAGGGCATTCCTCCAGACC 11281 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| || | || |||||||||||||| | || |||| ||||| | | ||| |||| Sbjct 11280 AGCAGAGGCTGATCTTTGCCGGCAAACAGCTTGAGGATGGCCGCACCCTTGCCGACTACA 11221 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | || || || || ||||| || || | ||||||||| | || ||||| Sbjct 11220 ACATCCAGAAGGAGTCCACCCTTCACCTTGTGCTAAGGTTGAGGGGAGG 11172 >seq2 Length=5918456 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || | || || |||| || ||||| || Sbjct 561461 ATGCAGATTTTCGTCAAGACCCTCACTGGGAAGACTATTACCCTCGAGGTCGAGTCTTCC 561520 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||||||||| | || ||||| || ||| ||||| ||||| || || || || || Sbjct 561521 GACACTATCGA-TAACGTGAAGGCGAAGATCCAGGACAAGGAAGGCATCCCCCCGGATCA 561579 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | |||||||| ||||| || || ||||||| | ||| ||| || ||||| Sbjct 561580 GCAGCGGTTGATTTTTGCAGGCAAGCAGTTGGAAGATGGCAGAACTCTGGCTGACTACAA 561639 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || |||||||| || || | ||||| Sbjct 561640 CATCCAGAAGGAATCCACCCTCCACCTGGTGCT 561672 >seq251 Length=123057 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||| | ||||| || | ||||| |||| || |||||||| Sbjct 98509 AATGCAGATCTTCGTGAAGACCCTCACCGGGAAGACAATCACCCTCGAGGTTGAGTCGTC 98450 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| ||||| || ||||| || ||| || || || || ||||| || || || Sbjct 98449 TGATACTATTGATAATGTGAAGGCGAAGATCCAAGATAAGGAGGGCATTCCCCCGGATCA 98390 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || ||||| ||||| || | ||||| | ||||| | | |||||||| Sbjct 98389 GCAGCGGCTCATCTTTGCGGGCAAGCAGCTCGAAGACGGCCGCACCCTTGCAGATTACAA 98330 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||| || || || || || ||| | ||||| Sbjct 98329 TATTCAGAAGGAGTCTACTCTGCATCTGGTGCT 98297 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/215 (70%), Gaps = 9/215 (4%) Strand=Plus/Minus Query 24992 CGGAACA-ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGG 25050 || |||| ||||| || || || |||||| | ||||| || ||||||| | || || | Sbjct 99423 CGAAACAGATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTGGAGGTCG 99364 Query 25051 AGTCGTCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATT 25106 |||| || || || ||||| |||| |||| || | || ||||| || || || Sbjct 99363 AGTCCTCGGATACCATCGACAACGTCA---AAGCCAAGATCCAA-GACAAGGAGGGCATC 99308 Query 25107 CCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTG 25166 || || ||||| ||| || | ||||| || ||||| || | || || | ||||| | Sbjct 99307 CCCCCAGACCAGCAGAGGCTCATTTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTC 99248 Query 25167 GGCGATTACAATATTCAAAAAGAATCCACGCTACA 25201 | ||||| || || || || ||||||||||| || Sbjct 99247 GCTGATTATAACATCCAGAAGGAATCCACGCTTCA 99213 >seq32 Length=1954954 Score = 109 bits (120), Expect = 5e-19 Identities = 164/232 (71%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 24995 AACA-ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGT 25053 |||| ||||||||||| || |||||| | ||||| || ||||||| |||| || |||| Sbjct 590525 AACAGATGCAAATATTCGTTAAGACTCTCACCGGGAAGACCATCACCCTCGAGGTTGAGT 590466 Query 25054 CGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 |||| ||||| ||||| | ||| || ||| ||||| || || ||||| || | Sbjct 590465 CGTCAGACACGATCGACAACGTTAAGGCGAAGATCCAGGACAAGGAGGGCATTCCTCCGG 590406 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | || ||| || |||| || ||||| || || | || || | || || | | |||| Sbjct 590405 ATCAGCAGAGGCTTATCTTCGCCGGGAAGCAGCTCGAGGACGGCCGTACCCTTGCGGATT 590346 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||| || || || || || || || || | || || ||||| || ||||| Sbjct 590345 ACAACATCCAGAAGGAGTCGACCCTTCACCTCGTTCTGAGGCTGAGGGGAGG 590294 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| | || || || | ||||| | || || ||||| || Sbjct 590064 ATGCAAATCTTTGTCAAGACACTCACTGGGAAGACGATCACCTTGGAGGTTGAGTCTTCA 590005 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || || | ||| || ||| ||||| || || ||||| || || || Sbjct 590004 GATACGATTGACAACGTAAAGGCGAAGATCCAGGACAAGGAGGGTATTCCTCCGGATCAG 589945 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || |||| |||||||||||||| | ||||| | || || | | ||| ||||| Sbjct 589944 CAGAGGCTTATCTTTGCCGGCAAACAGCTTGAAGACGGCCGTACCCTTGCCGACTACAAC 589885 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||| || || || || || | || || ||||| || ||||| Sbjct 589884 ATCCAAAAGGAGTCGACCCTTCACCTTGTTCTGAGGCTTAGGGGAGG 589838 >seq143 Length=574977 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| ||||| | || || || | ||||| |||| || |||||||| Sbjct 165810 AATGCAGATCTTTGTGAAGACCCTCACTGGGAAGACGATCACCCTCGAGGTCGAGTCGTC 165751 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| ||||| || ||||| || ||| || || || || ||||| || || || Sbjct 165750 TGATACTATTGATAATGTGAAGGCGAAGATCCAAGATAAGGAGGGCATTCCCCCGGATCA 165691 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || ||||| ||||| || | ||||| | ||||| | | |||||||| Sbjct 165690 GCAGCGGCTCATCTTTGCGGGCAAGCAGCTCGAAGACGGCCGCACCCTTGCAGATTACAA 165631 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || || || || || ||| | ||||| Sbjct 165630 TATCCAGAAGGAGTCTACTCTGCATCTGGTGCT 165598 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| | ||||| || ||||||| |||| || ||||| || Sbjct 166493 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCG 166434 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| ||||| || || ||||| || || || Sbjct 166433 GACACCATTGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCCCCAGATCAG 166374 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||| ||||| ||| | || |||| ||||| | | ||||| || Sbjct 166373 CAGAGGCTCATCTTTGCTGGCAAGCAACTTGAGGATGGCCGCACGCTCGCTGATTATAAC 166314 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || ||||||||||| || Sbjct 166313 ATCCAGAAGGAATCCACGCTTCA 166291 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/215 (71%), Gaps = 9/215 (4%) Strand=Plus/Minus Query 24992 CGGAACA-ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGG 25050 || |||| ||||| || || || |||||| | ||||| || ||||||| |||| || | Sbjct 166729 CGAAACAGATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCG 166670 Query 25051 AGTCGTCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATT 25106 |||| || || || ||||| |||| |||| || | || ||||| || || || Sbjct 166669 AGTCCTCGGATACCATCGATAACGTCA---AAGCCAAGATCCAA-GACAAGGAGGGCATC 166614 Query 25107 CCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTG 25166 || || ||||| ||| || | || ||||| ||||| || | || || | ||||| | Sbjct 166613 CCCCCAGACCAGCAGAGGCTCATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTC 166554 Query 25167 GGCGATTACAATATTCAAAAAGAATCCACGCTACA 25201 | ||||| || || || || ||||||||||| || Sbjct 166553 GCTGATTATAACATCCAGAAGGAATCCACGCTTCA 166519 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| | ||||| || ||||||| |||| || ||||| || Sbjct 166265 ATGCAGATCTTCGTCAAGACTCTAACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCG 166206 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || ||||| | ||| || ||| ||||| || || || || || || || Sbjct 166205 GATACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGATCAG 166146 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || || || ||||| || | || || | ||||| | | ||||| || Sbjct 166145 CAGAGGCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCTGATTATAAC 166086 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || ||||||||||| || Sbjct 166085 ATCCAGAAGGAATCCACGCTTCA 166063 >seq34 Length=3699824 Score = 102 bits (112), Expect = 7e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||||||||| | ||||| || ||||||| | || |||||| || Sbjct 904814 ATGCAAATATTTGTAAAGACCCTTACCGGAAAGACCATCACCCTGGAGGTGGAGAGCTCG 904755 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| ||||| | |||| ||| ||||||||||| || || || || || Sbjct 904754 GACACGATCGATAATGTGAAGGCGAAAATTCAG-GACAAAGAAGGCATCCCTCCGGATCA 904696 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| || || || | || || | ||||| | | ||| ||||| Sbjct 904695 GCAGAGGCTGATATTTGCTGGGAAGCAGCTGGAGGACGGCCGCACCCTTGCCGACTACAA 904636 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || || || ||| | ||||| Sbjct 904635 CATTCAGAAGGAGAGTACTCTCCATCTGGTGCT 904603 >seq53 Length=1478458 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || ||| |||| || || ||||||| |||| || ||| ||| Sbjct 997205 ATGCAAATCTTCGTGAAAACTCTGACAGGGAAGACCATCACCCTCGAGGTCGAGAGCTCT 997264 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||||| || || || |||| || | ||| ||||| || || ||||| || ||| Sbjct 997265 GACACTATTGA--CAATGTAAAAGCTAAGATTCA-GGACAAGGAGGGAATTCCTCCAGAC 997321 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || | | ||||| ||||| || || | || |||| | || | | |||||| Sbjct 997322 CAGCAAAGACTCATTTTCGCCGGGAAGCAGCTCGAGGATGGCAGAACCCTAGCTGATTAC 997381 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 || || || || || || || || ||| | |||||| Sbjct 997382 AACATCCAGAAGGAGTCTACTCTTCATCTGGTGCTA 997417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433323268058240