Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq689 87.8 2e-12 seq125 87.8 2e-12 seq63 86.0 7e-12 seq39 86.0 7e-12 seq3 86.0 7e-12 seq101 84.2 2e-11 seq23 84.2 2e-11 seq54 82.4 9e-11 >seq689 Length=17525 Score = 87.8 bits (96), Expect = 2e-12 Identities = 85/106 (80%), Gaps = 5/106 (5%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 4719 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 4776 Query 126325 GGGTTCGAACCCCACACCTGACAA-ATTATTATTGGAATTTTTGTT 126369 |||||| || |||||| ||| ||| |||||| || |||||| || Sbjct 4777 GGGTTCAAATCCCACAGCTGTCAATATTATTTTT--TATTTTTATT 4820 >seq125 Length=920313 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/94 (82%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 347167 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 347224 Query 126325 GGGTTCGAACCCCACACCTGACAA-ATTATTATT 126357 |||||| || |||||| ||| ||| |||||| || Sbjct 347225 GGGTTCAAATCCCACAGCTGTCAATATTATTTTT 347258 >seq63 Length=1285062 Score = 86.0 bits (94), Expect = 7e-12 Identities = 72/87 (83%), Gaps = 5/87 (6%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC---GGGAG 126321 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | | Sbjct 532086 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGATGAGGG 532143 Query 126322 CGTGGGTTCGAACCCCACACCTGACAA 126348 ||||||||| || ||||| ||||||| Sbjct 532144 CGTGGGTTCAAATCCCACTTCTGACAA 532170 >seq39 Length=1776819 Score = 86.0 bits (94), Expect = 7e-12 Identities = 72/87 (83%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 77528 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 77471 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 77470 GCGTGGGTTCAAATCCCACTTCTGACA 77444 >seq3 Length=5632934 Score = 86.0 bits (94), Expect = 7e-12 Identities = 72/87 (83%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 586091 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 586034 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 586033 GCGTGGGTTCAAATCCCACTTCTGACA 586007 >seq101 Length=849353 Score = 84.2 bits (92), Expect = 2e-11 Identities = 71/86 (83%), Gaps = 5/86 (6%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC---GGGAG 126321 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | | Sbjct 482638 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGATGAGGG 482581 Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||| || ||||| |||||| Sbjct 482580 CGTGGGTTCAAATCCCACTTCTGACA 482555 >seq23 Length=2153458 Score = 84.2 bits (92), Expect = 2e-11 Identities = 71/86 (83%), Gaps = 6/86 (7%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 1964943 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 1964886 Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||| || ||||| |||||| Sbjct 1964885 CGTGGGTTCAAATCCCACTTCTGACA 1964860 >seq54 Length=2466142 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/92 (82%), Gaps = 7/92 (8%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC---GGGAGC 126322 |||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | || Sbjct 623726 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGATGAGGGC 623783 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||||| || ||||| ||||| |||||| Sbjct 623784 GTGGGTTCAAATCCCACTTCTGAC--ATTATT 623813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556854563159040