Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq79 96.9 7e-15 seq3 96.9 7e-15 seq19 91.5 3e-13 seq131 87.8 4e-12 seq102 87.8 4e-12 seq78 87.8 4e-12 seq63 87.8 4e-12 seq41 87.8 4e-12 seq38 87.8 4e-12 seq5 87.8 4e-12 seq43 86.0 1e-11 seq9 86.0 1e-11 seq2 86.0 1e-11 >seq79 Length=1067010 Score = 96.9 bits (106), Expect = 7e-15 Identities = 62/68 (91%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 |||||||| |||||||||||||||||||| || ||||||| || ||||||||||||||| Sbjct 143553 ATAGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 143612 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 143613 AGCCCCAC 143620 >seq3 Length=5632934 Score = 96.9 bits (106), Expect = 7e-15 Identities = 62/68 (91%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 |||||||| |||||||||||||||||||| || ||||||| || ||||||||||||||| Sbjct 1774996 ATAGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 1775055 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 1775056 AGCCCCAC 1775063 >seq19 Length=2344052 Score = 91.5 bits (100), Expect = 3e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 142499 AGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTT 142558 |||| ||||| ||||||||| |||||||||| || ||||||| || ||||||||||||| Sbjct 401381 AGATTGCCCGTCTAGCTCAGTAGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTT 401322 Query 142559 CGAGCCCCAC 142568 |||||||||| Sbjct 401321 CGAGCCCCAC 401312 >seq131 Length=538547 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 355444 AGCCCGTCTAGCTCAGTAGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 355503 Query 142563 CCCCAC 142568 |||||| Sbjct 355504 CCCCAC 355509 >seq102 Length=809410 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 600831 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 600890 Query 142563 CCCCAC 142568 |||||| Sbjct 600891 CCCCAC 600896 >seq78 Length=1057147 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 47890 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 47831 Query 142563 CCCCAC 142568 |||||| Sbjct 47830 CCCCAC 47825 >seq63 Length=1285062 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 765324 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 765383 Query 142563 CCCCAC 142568 |||||| Sbjct 765384 CCCCAC 765389 >seq41 Length=1768129 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 662847 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 662906 Query 142563 CCCCAC 142568 |||||| Sbjct 662907 CCCCAC 662912 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 1652114 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1652173 Query 142563 CCCCAC 142568 |||||| Sbjct 1652174 CCCCAC 1652179 >seq38 Length=1794542 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 938471 AGCCCGTCTAGCTCAGTAGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 938412 Query 142563 CCCCAC 142568 |||||| Sbjct 938411 CCCCAC 938406 >seq5 Length=4049515 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 85654 AGCCCGTCTAGCTCAGTAGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 85595 Query 142563 CCCCAC 142568 |||||| Sbjct 85594 CCCCAC 85589 >seq43 Length=1752904 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 437010 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 436951 Query 142564 CCCAC 142568 ||||| Sbjct 436950 CCCAC 436946 >seq9 Length=4860633 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 1679856 GCCCGTCTAGCTCAGTAGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1679915 Query 142564 CCCAC 142568 ||||| Sbjct 1679916 CCCAC 1679920 >seq2 Length=5918456 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 5509737 GCCCGTCTAGCTCAGTAGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 5509796 Query 142564 CCCAC 142568 ||||| Sbjct 5509797 CCCAC 5509801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027825000433536