Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq34 109 5e-19 seq300 93.3 4e-14 seq32 93.3 4e-14 seq251 86.0 5e-12 seq53 86.0 5e-12 >seq34 Length=3699824 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || || |||| || || | || | ||||| || || || ||||||||||| Sbjct 905269 ATGCCACCGCGAAGTCGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCA 905328 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| ||||| | ||||| |||||| ||||||| | || ||||||||| Sbjct 905329 GCAAGGGTACGACCGTCTTCCAACTGTTTCCCAGCGAAGATGAGCCTTTGCTGGTCCGGA 905388 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| || ||| |||| | || | ||||||| | |||| Sbjct 905389 GGAATTCCCTCCTTGTCTTGGATTTTTGCCTTTACATTGTCGATCGTGTCGGAGCTTTCG 905448 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || || ||||| |||||||| ||||| |||||||| Sbjct 905449 ACCTCGAGAGTGATGGTCTTCCCGGTTAGAGTTTTGACAAAGATCTGCAT 905498 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||||||||| || | ||| || | ||| | || || || || || ||||| ||| Sbjct 905041 ATACCGCCACGGAGACGCAACACCAGATGGAGAGTGCTCTCCTTCTGGATATTGTAGTCG 905100 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||| ||||| | || |||||||| | || || | ||| ||||| || Sbjct 905101 GCAAGGGTACGGCCGTCTTCCAACTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCTGGG 905160 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| ||||||| || | | |||| |||||| | | ||| Sbjct 905161 GGAATACCTTCCTTGTCCTGAATCTTTGCCTTCACATTGTCAATGGTGTCAGAGCTCTCG 905220 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| ||| | || || || || ||||| || || || ||||||||| Sbjct 905221 ACTTCCAAGGTGATGGTCTTCCCAGTGAGAGTCTTCACGAAGATCTGCATG 905271 >seq300 Length=293291 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| | ||| | || ||||| || || |||||||| ||| | || || ||| || Sbjct 10961 AACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTC 11020 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 ||| || || || || ||||||| | ||| |||||||||||||| ||||| ||||| Sbjct 11021 AAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGAGGAATCCCTTCCTTGTCCTG 11080 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||||| ||| | | || | || || | ||| || || || | ||| | || || Sbjct 11081 GATCTTGGCTTTAACATTGTCGATTGTATCTGAGGACTCCACCTCAAGGGTGATGGTCTT 11140 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 |||||| || || || || || ||||||||| || Sbjct 11141 GCCGGTGAGGGTCTTCACGAAGATCTGCATGCCT 11174 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| | || || ||| ||||| ||||| || Sbjct 11202 GTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCATCCTCAAGCTGTTTGCCG 11261 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| ||||||||||| || || || |||||| ||| Sbjct 11262 GCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCCTCCTTATCCTGGATCTTTGCCTTT 11321 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||| || | ||| ||||| || | ||| | ||| ||||| || || || Sbjct 11322 ACATTGTCGATGGTATCCGAGGACTCGACCTCGAGGGTGATCGTCTTGCCTGTGAGGGTC 11381 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 11382 TTCACGAAGATCTGCAT 11398 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| || | | ||| | ||| | ||||| || || || ||||||||||| Sbjct 10488 CCACCACGGAGACGGAGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAATCTGCA 10547 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | || || ||||| || || || || ||| | || || | ||| || ||||| ||| Sbjct 10548 AGGGTGCGGCCGTCTTCGAGCTGCTTGCCCGCGAAAATCAGCCTCTGCTGATCCGGGGGA 10607 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || || || ||||| ||||||| ||| | | |||| || || | ||||| || Sbjct 10608 ATTCCCTCCTTGTCCTGAATCTTTGCTTTGACGTTATCAATTGTATCAGATGATTCAACC 10667 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| || | || |||||||| || || || || || |||||||| Sbjct 10668 TCCAGCGTGATTGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 10714 >seq32 Length=1954954 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || |||| ||| | || | || || || ||||| |||||||| ||| Sbjct 589835 ATACCTCCCCTAAGCCTCAGAACAAGGTGAAGGGTCGACTCCTTTTGGATGTTGTAGTCG 589894 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||| |||||||| ||||| || || |||| || | ||| || |||||| Sbjct 589895 GCAAGGGTACGGCCGTCTTCAAGCTGTTTGCCGGCAAAGATAAGCCTCTGCTGATCCGGA 589954 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| ||||| |||| | |||| || || | || || Sbjct 589955 GGAATACCCTCCTTGTCCTGGATCTTCGCCTTTACGTTGTCAATCGTATCTGAAGACTCA 590014 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || |||| ||| | ||| || || || || || || ||||| || |||||| || Sbjct 590015 ACCTCCAAGGTGATCGTCTTCCCAGTGAGTGTCTTGACAAAGATTTGCATGCCT 590068 >seq251 Length=123057 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || ||||||||||| | || || ||| || || || |||||| Sbjct 98540 GTGGACTCTTTCTGGATGTTGTAATCAGCAAGCGTGCGGCCATCCTCCAGCTGCTTACCA 98599 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| || || || || ||||| || ||||| ||||| || Sbjct 98600 GCAAAGATGAGCCTCTGCTGATCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 98659 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||| || | || ||||| || | ||| | || |||||||| ||||| Sbjct 98660 ACGTTGTCGATGGTATCTGATGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTC 98719 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 98720 TTGACAAAGATCTGCAT 98736 >seq53 Length=1478458 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC- 114211 || || || || |||| | || | ||| | ||||| || || || ||||||||||| Sbjct 997434 ATCCCACCGCGAAGTCGTAGCACCAGATGAAGAGTAGACTCCTTCTGGATGTTGTAATCA 997375 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 ||| | || | ||| || || || || || ||| | ||||| | || ||||| || Sbjct 997374 GCT-AGGGTTCTGCCATCCTCGAGCTGCTTCCCGGCGAAAATGAGTCTTTGCTGGTCTGG 997316 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 |||||| || || ||||| |||||| ||||| | |||| ||||| | | || Sbjct 997315 AGGAATTCCCTCCTTGTCCTGAATCTTAGCTTTTACATTGTCAATAGTGTCAGAGCTCTC 997256 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||| || | ||| | || || || ||||||||||| || || || ||||| Sbjct 997255 GACCTCGAGGGTGATGGTCTTCCCTGTCAGAGTTTTCACGAAGATTTGCAT 997205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420129812132352